| #30 |
Allow "leave one out" nway transitive searches |
core |
|
enhancement |
diane |
03/16/06 |
| #81 |
Storing and searching metadata |
Qt Gui |
|
enhancement |
diane |
04/06/06 |
| #249 |
darcs tag mussa_1.1.0 |
Qt Gui |
|
defect |
diane |
02/22/07 |
| #263 |
Compile warnings must die! |
Qt Gui |
|
defect |
diane |
04/19/07 |
| #77 |
Font needs to be better... |
Qt Gui |
|
enhancement |
diane |
03/29/06 |
| #82 |
Unit test python API |
Qt Gui |
|
enhancement |
diane |
04/07/06 |
| #98 |
QtAssistant needs to be put in the right place on os x. |
Qt Gui |
|
enhancement |
diane |
06/06/06 |
| #100 |
There should be some way to display the annotation name with the annotation track |
Qt Gui |
|
enhancement |
diane |
06/06/06 |
| #108 |
Cancel on the progress bar should do something |
Qt Gui |
|
enhancement |
diane |
06/28/06 |
| #242 |
make really sure people understand how repeatmasking prevents motifs from being shown. |
Qt Gui |
|
defect |
diane |
11/27/06 |
| #266 |
Sub-analysis drawing bug (see attached screenshots) |
Qt Gui |
|
defect |
diane |
07/16/07 |
| #267 |
Sequence View soft threshold control non-responsive |
Qt Gui |
|
defect |
diane |
07/17/07 |
| #268 |
files that lack a new line would make the mupa parser choke |
Qt Gui |
|
defect |
diane |
08/02/07 |
| #7 |
Reuse seqcomps |
core |
|
enhancement |
diane |
03/12/06 |
| #8 |
Per species thresholds |
core |
|
enhancement |
diane |
03/12/06 |
| #9 |
Connect to cartwheel |
Qt Gui |
|
enhancement |
diane |
03/12/06 |
| #13 |
AnnotationColor mapper needs a user interface |
Qt Gui |
|
enhancement |
diane |
03/14/06 |
| #17 |
Allow user to specify an offset for base pair location label |
Qt Gui |
|
enhancement |
diane |
03/15/06 |
| #28 |
Allow user to force a loaded sequence to be reverse complimented. |
Qt Gui |
|
enhancement |
diane |
03/16/06 |
| #61 |
For mac users it'd be useful to make double clicking on a data file actually load mussagl |
Qt Gui |
|
enhancement |
diane |
03/24/06 |
| #65 |
It'd be neat if you could select a region and go to ucsc |
Qt Gui |
|
enhancement |
diane |
03/24/06 |
| #80 |
Difference between analyses |
Qt Gui |
|
enhancement |
diane |
03/30/06 |
| #87 |
Autodetect threshold |
Qt Gui |
|
enhancement |
diane |
04/11/06 |
| #106 |
Figure out how to test copySelectedTracks |
core |
|
enhancement |
diane |
06/20/06 |
| #141 |
Vector output |
Qt Gui |
|
enhancement |
diane |
10/02/06 |
| #145 |
Use titus' paircomp and motility |
core |
|
enhancement |
diane |
10/04/06 |
| #201 |
Run analyses in worker thread |
core |
|
enhancement |
diane |
10/20/06 |
| #203 |
Unit test the code that generates all the mussa filename |
core |
|
enhancement |
diane |
10/20/06 |
| #204 |
When you resize a mussa window, resize the drawing too. |
Qt Gui |
|
enhancement |
diane |
10/20/06 |
| #205 |
Add button for autofitting sequence to window |
Qt Gui |
|
enhancement |
diane |
10/20/06 |
| #209 |
Extend the command line parsing to allow fully specifying an analysis |
Qt Gui |
|
enhancement |
diane |
10/20/06 |
| #218 |
Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog |
Qt Gui |
|
enhancement |
diane |
10/24/06 |
| #219 |
Reordering sequences in an analysis would be really nice |
Qt Gui |
|
enhancement |
diane |
10/24/06 |
| #222 |
Allow hyperlink annotations for CDS to PyMol rendering of protein structure |
Qt Gui |
|
enhancement |
diane |
10/25/06 |
| #224 |
Define a common base class between MussaWindow and MussAlignedWindow |
Qt Gui |
|
enhancement |
diane |
10/26/06 |
| #228 |
Allow more vertical collapse of description widgets |
Qt Gui |
|
enhancement |
diane |
10/27/06 |
| #238 |
Set left offset graphically |
Qt Gui |
|
enhancement |
diane |
11/22/06 |
| #241 |
One of the annotations needed is to show where the start of the gene is |
Qt Gui |
|
enhancement |
diane |
11/27/06 |
| #245 |
Implement back_inserter for sequence type |
core |
|
enhancement |
diane |
01/04/07 |
| #6 |
Analysis saving is smelly |
core |
|
task |
diane |
03/12/06 |
| #21 |
Implement a better way of handling the GL selection buffer |
core |
|
task |
diane |
03/15/06 |
| #88 |
Find titus' paper on FR versus the bacterial genomes |
other |
|
task |
diane * |
04/11/06 |
| #202 |
Investigate SIP instead of boost::python |
Qt Gui |
|
task |
king |
10/20/06 |
| #232 |
Document the report bp copied number. |
Qt Gui |
|
task |
king |
10/27/06 |
| #234 |
Document * in title when there are unsaved changes |
Qt Gui |
|
task |
king |
10/27/06 |
| #248 |
Test latest build on all platforms |
Qt Gui |
|
task |
diane |
02/22/07 |
| #258 |
document new escape to clear selection |
Qt Gui |
|
task |
king |
04/16/07 |
| #264 |
Document sequence properties |
other |
|
task |
king |
04/20/07 |
| #262 |
ThresholdWidget.reset() SIGNAL/SLOTS issue. |
Qt Gui |
|
defect |
diane |
04/19/07 |
| #11 |
create unifed sequence type |
core |
|
enhancement |
diane |
03/13/06 |
| #18 |
segments should indicate if they're both forward and reveresed |
core |
|
enhancement |
diane |
03/15/06 |
| #29 |
Connect to Core Match |
core |
|
enhancement |
diane |
03/16/06 |
| #48 |
Automate win32 installer build |
other |
|
enhancement |
diane |
03/22/06 |
| #54 |
Allow compressing repeat regions |
Qt Gui |
|
enhancement |
diane |
03/23/06 |
| #112 |
Sequence logo |
Qt Gui |
|
enhancement |
diane |
07/11/06 |
| #123 |
Allow hiding sidebars |
Qt Gui |
|
enhancement |
diane |
09/13/06 |
| #124 |
report patch version |
core |
|
enhancement |
diane |
09/13/06 |
| #136 |
allow absolute positioning |
Qt Gui |
|
enhancement |
diane |
09/27/06 |
| #155 |
Include a simple repeat filter |
core |
|
enhancement |
diane |
10/13/06 |
| #230 |
shipit script should ship source distribution too. |
other |
|
enhancement |
diane |
10/27/06 |
| #253 |
Show conserved window on local alignment display |
Qt Gui |
|
enhancement |
diane |
03/02/07 |
| #231 |
Document copy and paste into motif editor now functional. |
Qt Gui |
|
task |
king |
10/27/06 |
| #89 |
Blast to find mussa regions |
core |
|
enhancement |
diane |
04/11/06 |