{6} All Tickets By Milestone (Including closed) (266 matches)

A more complex example to show how to make advanced reports.

unit tests

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#82 Unit test python API Qt Gui new None enhancement critical diane 10/20/06
#106 Figure out how to test copySelectedTracks core new None enhancement major diane 10/20/06
#203 Unit test the code that generates all the mussa filename core new None enhancement major diane 10/24/06
#208 the alg unittest executable needs to be broken up core closed fixed enhancement major diane 01/04/07
#207 Reenable GUI tests Qt Gui closed fixed defect major diane 10/24/06

release_1.2

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#30 Allow "leave one out" nway transitive searches core new None enhancement blocker diane 10/20/06
#205 Add button for autofitting sequence to window Qt Gui new None enhancement major diane 10/20/06
#218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog Qt Gui new None enhancement major diane 10/27/06
#228 Allow more vertical collapse of description widgets Qt Gui new None enhancement major diane 11/22/06
#241 One of the annotations needed is to show where the start of the gene is Qt Gui new None enhancement major diane 11/27/06
#123 Allow hiding sidebars Qt Gui new None enhancement minor diane 10/20/06
#124 report patch version core new None enhancement minor diane 10/20/06
#230 shipit script should ship source distribution too. other new None enhancement minor diane 10/27/06
#262 ThresholdWidget.reset() SIGNAL/SLOTS issue. Qt Gui new None defect minor diane 04/19/07
#193 Changing a species name doesn't set dirty flag. Qt Gui new None 1.0 enhancement trivial diane 10/20/06
#212 ESC key should by bound to 'deselect' current selection. Qt Gui closed fixed enhancement trivial diane 04/16/07
#243 Change mussa track to white boxes with Ns highlighted in black Qt Gui closed fixed enhancement major diane 04/11/07

release_1.1

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#249 darcs tag mussa_1.1.0 Qt Gui new None defect critical diane 02/22/07
#263 Compile warnings must die! Qt Gui new None defect critical diane 04/19/07
#248 Test latest build on all platforms Qt Gui new None task major diane 02/22/07
#266 Sub-analysis drawing bug (see attached screenshots) Qt Gui new None defect major diane 07/16/07
#267 Sequence View soft threshold control non-responsive Qt Gui new None defect major diane 07/17/07
#265 Mussa annotation file didn't work if the last sequence wasn't terminated by a newline core closed fixed defect major diane 06/22/07
#259 New Annotations hide the sequence when you zoom to sequence view Qt Gui closed fixed defect critical diane 05/02/07
#252 Make scroll wheel work Qt Gui closed fixed enhancement major king 04/23/07
#257 Saving analysis saves at current threshold Qt Gui closed fixed defect major king 04/19/07
#240 When there are no matches, mussa doesn't seem to display anything Qt Gui closed fixed defect minor king 04/19/07
#261 Mussa mupa comment character required a space core closed fixed defect minor diane 04/19/07
#260 Mupa parser is cranky on windows files core closed fixed defect major diane 04/19/07
#256 Assertion failed Qt Gui closed fixed defect major diane 04/03/07
#255 Even telling cmake to use python2.3 mussa still builds against 2.5 python interface closed fixed defect major diane 03/13/07
#254 Sub-analysis failing to draw paths on init Qt Gui closed fixed defect minor king 03/02/07
#251 Save to image crash Qt Gui closed fixed defect major king 03/02/07
#250 Cmake build failure: /usr/bin/ld: cannot find -loptimized Qt Gui closed fixed defect blocker diane 02/23/07
#247 Increase version number to 1.1.0 core closed fixed task blocker diane 02/23/07
#246 Add "What's this?" documentation to as many elements of the GUI as possible. Qt Gui closed fixed enhancement major king 02/22/07
#195 Disable motif and closing motif editor causes loss of motifs. Qt Gui closed fixed 1.0 defect critical diane 02/20/07
#239 Report error when trying to load a directory as an annotation. core closed fixed defect major diane 02/20/07
#244 len(mussa.paths()) returns number of tracks, not the number of paths found python interface closed fixed defect major diane 12/14/06
#206 We need some way of indicating Ns Qt Gui closed duplicate enhancement critical diane 12/13/06
#226 QtTest is now a framework other closed fixed defect major diane 12/13/06
#111 Set zero/alignment point for a sequence Qt Gui closed fixed enhancement critical diane 11/22/06
#237 Crashing with invalid file name Qt Gui closed fixed defect major diane 11/17/06
#236 Error parsing annotation file should also include the filename in the exception. core closed fixed enhancement major diane 10/30/06
#158 When unable to parse a fasta file report its name Qt Gui closed fixed enhancement critical diane 10/30/06
#210 see about removing some of the wasted border width on the sidebars Qt Gui closed wontfix enhancement trivial diane 10/30/06
#182 Mussa views need vertical scrolls Qt Gui closed fixed enhancement critical diane 10/27/06
#233 when first displaying mussa the tracks aren't sized to the available viewport on os x Qt Gui closed fixed defect major diane 10/27/06
#217 Use QtDesktopServices for openURL Qt Gui closed fixed enhancement major diane 10/27/06
#194 use window feedback to show that there are unsaved changes Qt Gui closed fixed 1.0 enhancement trivial diane 10/27/06
#215 You should be able to paste into the motif editor Qt Gui closed fixed enhancement critical diane 10/26/06
#211 Report how many basepairs are copied Qt Gui closed fixed enhancement major diane 10/26/06

release_1.0

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#229 Package Everything for 1.0 other closed fixed task major diane 11/22/06
#235 set version to 1.0 in version.h other closed fixed task major diane 11/01/06
#223 Set the Window Icon to be the Mussa icon Qt Gui closed fixed 1.0 enhancement trivial king 10/26/06
#216 subanalysis doesn't call setSoftThreshold to after finishing analysis Qt Gui closed fixed defect major diane 10/23/06
#199 After [451] I noticed that subanalyses didn't seem to have motif information Qt Gui closed fixed defect major diane 10/19/06
#200 Pushing the threshold change button too fast will cause mussa to crash Qt Gui closed fixed defect major diane 10/19/06
#163 Motif loading doesn't work with release builds Qt Gui closed fixed defect major diane 10/19/06
#197 the subanalysis when using the original mck example draws lines off the sequence. Qt Gui closed fixed defect major diane 10/18/06
#192 Steven can't save with mussa Qt Gui closed fixed defect major diane 10/17/06
#188 Save motifs action does not append .mtl or .txt by default Qt Gui closed fixed 1.0 enhancement minor diane 10/17/06
#187 Editing a motif does not set dirty flag. Qt Gui closed fixed 1.0 defect minor diane 10/17/06
#186 Motif dialog on load existing motifs behavior needs update. Qt Gui closed fixed 1.0 enhancement minor diane 10/17/06
#180 shipit script on os x needs to validate the archive other closed fixed defect major diane 10/16/06
#184 Dont link against X11 on OS X other closed fixed defect major diane 10/16/06
#183 Seqcomp is case sensitive core closed fixed defect major diane 10/16/06

from __future__ import magic

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#81 Storing and searching metadata Qt Gui new None enhancement blocker diane 10/13/06
#8 Per species thresholds core new None enhancement major diane 10/04/06
#28 Allow user to force a loaded sequence to be reverse complimented. Qt Gui new None enhancement major diane 10/04/06
#80 Difference between analyses Qt Gui new None enhancement major diane 10/13/06
#87 Autodetect threshold Qt Gui new None enhancement major diane 10/13/06
#219 Reordering sequences in an analysis would be really nice Qt Gui new None enhancement major diane 10/24/06
#222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure Qt Gui new None enhancement major diane 10/25/06
#238 Set left offset graphically Qt Gui new None enhancement major diane 11/22/06
#245 Implement back_inserter for sequence type core new None enhancement major diane 01/04/07
#18 segments should indicate if they're both forward and reveresed core new None enhancement minor diane 10/13/06
#54 Allow compressing repeat regions Qt Gui new None enhancement minor diane 10/13/06
#112 Sequence logo Qt Gui new None enhancement minor diane 10/04/06
#155 Include a simple repeat filter core new None enhancement minor diane 10/13/06

from __future__ import docs

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#159 Create track macro to display changelog with build numbers other new None 1.0 task minor king 10/27/06
#165 Include a section on creating a motif list file using the smn1 data. other new None 1.0 task minor king 10/27/06

document_1.1

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#198 Document the multi add to sub-analysis feature. Qt Gui new None 1.0 task major king 10/27/06
#221 Discover/document effect of ordering species on analysis run times. core new None 1.0 task major king 10/27/06
#232 Document the report bp copied number. Qt Gui new None task major king 10/27/06
#234 Document * in title when there are unsaved changes Qt Gui new None task major king 10/27/06
#242 make really sure people understand how repeatmasking prevents motifs from being shown. Qt Gui new None defect major diane 11/27/06
#258 document new escape to clear selection Qt Gui new None task major king 04/16/07
#264 Document sequence properties other new None task major king 04/20/07
#231 Document copy and paste into motif editor now functional. Qt Gui new None task minor king 10/27/06

document_1.0

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#177 Confirm description of blue conservation tracks is correct. other closed fixed 1.0 task minor diane 02/14/07
#174 Confirm file formats are documented and correct. other closed fixed 1.0 task major diane 02/14/07
#152 Update mussa_manual.adp to latest tutorial version other closed fixed task minor king 11/01/06
#213 Document how to deselect tracks/paths Qt Gui closed fixed 1.0 task minor king 10/27/06
#170 After implementing ticket:164, update 'Load Mupa' section to link to SMN1 example .mupa. other closed fixed 1.0 task major king 10/27/06
#225 Document mussagl command line option Qt Gui closed fixed 1.0 task minor king 10/27/06
#162 Mussa manual: Update major new features section other closed fixed 1.0 task minor king 10/27/06
#168 Mussa manual: Update Mac OS X install instructions other closed fixed 1.0 task major king 10/27/06
#214 Document why sub-analysis exists other closed fixed 1.0 enhancement minor king 10/27/06
#137 Document why Base pair match lines on the sequence view don't always connect all the sequences other closed fixed task trivial diane 10/27/06
#227 Document Python useage in Mussagl Qt Gui closed fixed 1.0 task major king 10/27/06
#167 Add an "Understanding Mussa" section to manual. other closed fixed 1.0 task major king 10/27/06
#164 Include a section on creating a .mupa file using the smn1 data. other closed fixed 1.0 task major king 10/27/06
#178 Update all screenshots to latest version of Mussa. other closed fixed 1.0 task major king 10/27/06
#196 Motif editor: document how to delete a motif other closed fixed 1.0 enhancement major king 10/18/06
#179 Add a section on "File > New Mussa Window" feature. other closed fixed 1.0 task major king 10/18/06
#189 Document "save on close" section after close of ticket:187 other closed fixed 1.0 task major king 10/18/06
#190 Update 'save motifs' section after close of ticket #188. other closed fixed 1.0 task minor king 10/18/06
#191 Update "Motif Dialog" section other closed fixed 1.0 enhancement major king 10/17/06
#175 Document new 'save motifs' feature. other closed fixed 1.0 task major king 10/17/06
#176 Document 'Save Analysis' and 'Save Analysis As' features. other closed fixed 1.0 task major king 10/17/06
#181 Update 'Load a mussa parameter file' section other closed fixed task major king 10/17/06
#185 Update "Load an analysis" section (text/screenshots) other closed fixed 1.0 task major king 10/17/06
#169 Update "New Analysis" section as the Dialog box has changed. other closed fixed 1.0 task major king 10/17/06
#171 Remove the "Motif Toggle" button from manual. other closed fixed 1.0 defect major king 10/16/06
#173 Update "Sequence Information Bar" section, as it has changed in latest version. other closed fixed 1.0 enhancement minor king 10/16/06
#172 Update "Dynamic Threshold" section as the widget has changed. other closed fixed 1.0 enhancement major king 10/16/06
#166 Update Mussa summary screenshot to latest version other closed fixed task major king 10/16/06
#161 Add link to smn1 example data (since the UCSC tutorial is based on it) other closed fixed 1.0 task major king 10/16/06
#157 Mussa manual: document 'save to image' feature other closed fixed task major king 10/16/06
#156 Mussa manual - meta ticket other closed invalid task major king 10/13/06
#153 Allow users to specify the file load file mask Qt Gui closed fixed task trivial king 10/13/06

Standing on our heads

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#77 Font needs to be better... Qt Gui new None enhancement critical diane 10/13/06
#98 QtAssistant needs to be put in the right place on os x. Qt Gui new None enhancement critical diane 10/04/06
#100 There should be some way to display the annotation name with the annotation track Qt Gui new None enhancement critical diane 10/04/06
#108 Cancel on the progress bar should do something Qt Gui new None enhancement critical diane 10/13/06
#6 Analysis saving is smelly core new None task major diane 10/13/06
#7 Reuse seqcomps core new None enhancement major diane 10/20/06
#9 Connect to cartwheel Qt Gui new None enhancement major diane 10/13/06
#13 AnnotationColor mapper needs a user interface Qt Gui new None enhancement major diane 10/20/06
#17 Allow user to specify an offset for base pair location label Qt Gui new None enhancement major diane 11/22/06
#21 Implement a better way of handling the GL selection buffer core new None task major diane 10/13/06
#61 For mac users it'd be useful to make double clicking on a data file actually load mussagl Qt Gui new None enhancement major diane 10/13/06
#65 It'd be neat if you could select a region and go to ucsc Qt Gui new None enhancement major diane 08/23/06
#141 Vector output Qt Gui new None enhancement major diane 10/02/06
#145 Use titus' paircomp and motility core new None enhancement major diane 10/04/06
#201 Run analyses in worker thread core new None enhancement major diane 10/20/06
#202 Investigate SIP instead of boost::python Qt Gui new None task major king 05/15/07
#204 When you resize a mussa window, resize the drawing too. Qt Gui new None enhancement major diane 10/27/06
#209 Extend the command line parsing to allow fully specifying an analysis Qt Gui new None enhancement major diane 10/20/06
#224 Define a common base class between MussaWindow and MussAlignedWindow Qt Gui new None enhancement major diane 10/26/06
#11 create unifed sequence type core new None enhancement minor diane 10/20/06
#29 Connect to Core Match core new None enhancement minor diane 10/13/06
#136 allow absolute positioning Qt Gui new None enhancement minor diane 10/04/06
#253 Show conserved window on local alignment display Qt Gui new None enhancement minor diane 03/02/07
#89 Blast to find mussa regions core new None enhancement trivial diane 10/13/06
#10 Integrate motifs with annotations core closed duplicate defect major diane 10/04/06
#105 Load Analysis should spawn a new window Qt Gui closed fixed defect minor diane 09/15/06
#33 changing threshold can cause the UI to freeze Qt Gui closed fixed defect major diane 06/28/06
#84 The analysis title should report what file you loaded Qt Gui closed fixed trivial diane 06/25/06
#67 You should be able to open multiple analyses Qt Gui closed duplicate major diane 06/25/06

Few Small Repairs

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#150 Example data for 1.0 release Qt Gui closed fixed task major diane 10/13/06
#151 Crash is possible when creating a subanalysis smaller than the window Qt Gui closed fixed defect major diane 10/13/06
#160 error: default argument for parameter of type ‘MussaRef’ has type ‘int’ Qt Gui closed fixed defect major king 10/13/06
#131 When closing an analysis window, cancel doesn't prevent the close Qt Gui closed worksforme defect major diane 10/13/06
#96 Save to image broken Qt Gui closed fixed defect minor king 10/13/06
#49 QAssistant Mussa Docs core closed fixed defect critical diane 10/13/06
#133 Should be able to save motifs core closed fixed enhancement critical diane 10/12/06
#154 off by one error when drawing segments Qt Gui closed fixed defect blocker diane 10/12/06
#120 Windows doesn't have python installed by default Qt Gui closed fixed enhancement major diane 10/12/06
#149 Handle " in motif names Qt Gui closed fixed defect trivial diane 10/11/06
#126 Figure out how to get the spirit parsers to report parse errors core closed fixed defect major diane 10/11/06
#148 setup_analysis dialog should make sure that the threshold is not greater than the window size. Qt Gui closed fixed defect minor diane 10/10/06
#146 Win32: Create new analysis mystery crash Qt Gui closed fixed defect blocker king 10/10/06
#147 Sometimes the width of a quadrallateral is too small Qt Gui closed fixed defect trivial diane 10/10/06
#139 Edit motif window looses motif information when closed Qt Gui closed fixed defect major diane 10/10/06
#134 Width of seqcomp match line is wrong Qt Gui closed fixed defect blocker diane 10/10/06
#144 IUPAC codes are destroyed by the sequence normalization code Qt Gui closed fixed defect critical diane 10/10/06
#103 Motifs need a name field Qt Gui closed fixed enhancement minor diane 10/05/06
#143 add command line option to annotate an analysis with a motif file. Qt Gui closed fixed enhancement major diane 10/04/06
#142 It'd be really useful to trigger a subanalysis from an aligned sequence view. Qt Gui closed fixed enhancement major diane 10/03/06
#140 Load Motifs doesn't do anything Qt Gui closed fixed defect major diane 10/03/06
#138 Sequence view window needs a title Qt Gui closed fixed defect major diane 10/03/06
#122 Motif editor needs to support more than 10 motifs Qt Gui closed fixed enhancement critical diane 09/28/06
#135 Win32: Save as not working... causes crash. Qt Gui closed fixed defect critical king 09/25/06
#125 autodetect if python needs -lutil Qt Gui closed fixed defect major diane 09/18/06
#132 Make open saved analysis open a new window Qt Gui closed duplicate enhancement major diane 09/15/06
#130 Save is relative to the current directory Qt Gui closed fixed defect major diane 09/15/06
#129 Subseq doesn't support trees correctly Qt Gui closed fixed defect major diane 09/15/06
#127 The sidebar layout isn't right after loading a second analysis into the same window Qt Gui closed fixed defect major diane 09/14/06
#128 the editable sequence name only shows the end of long names. Qt Gui closed fixed defect trivial diane 09/14/06
#116 Perhaps the motif file should have a name field. core closed fixed enhancement major diane 09/13/06
#73 Performance problems doing analysis Qt Gui closed invalid defect major diane 09/13/06
#101 On windows, the file browse button doesn't remember the previous path Qt Gui closed fixed enhancement major diane 09/12/06
#107 Motifs don't show up on the Mussa Aligned Sequence window anymore. Qt Gui closed worksforme defect critical diane 09/12/06
#114 Location analyses are saved to is ill-defined on OS X. Qt Gui closed fixed defect major diane 09/12/06
#119 Add dependencies to MussaglBuild page other closed fixed task major diane 09/12/06
#118 Tracks need an edit properites option. Qt Gui closed fixed enhancement major diane 08/23/06
#86 Progresss bar Qt Gui closed fixed defect major diane 08/23/06
#75 The scrollbar navigation when zoomed in jumps too far Qt Gui closed fixed defect critical diane 08/10/06
#59 the washed out sequence should actually be partially transparent. Qt Gui closed fixed defect major diane 08/10/06
#115 The create an analysis screen create the sequences in the reverse order. Qt Gui closed fixed defect minor diane 08/10/06
#56 Define analysis should include scroll area when SequenceWidget count >= 3 Qt Gui closed fixed defect minor king 08/02/06
#110 Running a subanalysis with nothing loaded causes the program to crash Qt Gui closed fixed defect major diane 07/06/06
#109 Subanalysis sequence list wasn't being cleared Qt Gui closed fixed defect major diane 07/06/06
#20 Toggle Motif Button Implementation Qt Gui closed fixed defect minor king 07/01/06
#26 SubAnalysis mode Qt Gui closed fixed enhancement critical diane 06/30/06
#71 AnnotationColors don't always color motifs correctly Qt Gui closed worksforme defect critical diane 06/29/06
#92 Allow one to temporarily disable a motif core closed fixed defect blocker diane 06/29/06
#95 Annotations masked out when motif defined and then undefined. Qt Gui closed fixed defect minor diane 06/29/06
#51 Copying sequence might be useful Qt Gui closed fixed enhancement major diane 06/28/06
#102 Update "blocking the gui" comment in --no-gui mode. core closed wontfix enhancement trivial diane 06/28/06
#52 Saved analysis needs to keep widow size and threshold for threshold widget Qt Gui closed fixed defect minor diane 06/28/06
#24 Clean up the signals and slots Qt Gui closed fixed defect minor diane 06/28/06
#22 default size hint broken Qt Gui closed fixed defect trivial diane 06/28/06
#15 Unify build system core closed fixed defect major diane 06/28/06
#35 Zoom Icon Qt Gui closed fixed minor diane 06/25/06
#68 The web site should have the Caltech and possibly BMNC logo Qt Gui closed fixed major king 06/25/06
#58 why does mussa take so long to recompute a large nway? Qt Gui closed duplicate defect major diane 06/25/06
#43 After scrolling a sequence browser window, selection boxes break Qt Gui closed fixed defect minor diane 06/25/06
#50 Switch to using Qt4.1 resources (automatically compiles resources into binary). Qt Gui closed fixed defect minor diane 06/25/06
#39 sidebar rendering problems Qt Gui closed fixed major diane 06/25/06
#44 Computation of reverse compliment colors is buggy Qt Gui closed fixed critical diane 06/25/06
#76 Qt 4.1.1 crashes on barbara's computer Qt Gui closed invalid defect trivial diane 06/25/06
#83 Mussa should complain about misformatted fasta files instead of crashing. core closed fixed defect critical diane 06/25/06
#94 quits at viewing allignment Qt Gui closed fixed defect major diane 06/25/06
#62 Aligning sequence that has a reverse compliment doesn't fully align correctly Qt Gui closed fixed defect blocker diane 06/25/06
#91 quits Qt Gui closed fixed defect major diane 06/25/06
#34 Unused variable 'max_range' in 'void ScrollableSequenceBrowser::updateScrollBar()' Qt Gui closed fixed defect minor diane 06/25/06
#57 Define analysis is annoying Qt Gui closed fixed critical diane 06/25/06
#53 Copy an example into the os x dmg other closed fixed trivial diane 06/25/06
#46 link in icons Qt Gui closed fixed defect minor diane 06/25/06
#31 Threshold Widget should use spinboxes Qt Gui closed fixed major diane 06/25/06
#78 Reverse compliment alignment lines dont seem to match up core closed fixed critical diane 06/25/06
#66 The annotation for myogenin needs to be checked. Qt Gui closed fixed major diane 06/25/06
#74 On OSX when maxmizing the sidebar stays on the GL canvas Qt Gui closed fixed defect trivial diane 06/25/06
#70 Need to be able to save screenshots in View Alignment Page Qt Gui closed fixed major diane 06/25/06
#64 Occasionally ConservedPath crashes Qt Gui closed fixed minor diane 06/25/06
#85 mussagl quits, just like i will AGAIN soon. core closed fixed defect critical diane 06/25/06
#63 with two sequences the align sequence view doesn't show any connections Qt Gui closed fixed defect critical diane 06/25/06
#60 sequence alignment view needs zoom core closed fixed defect trivial diane 06/25/06
#69 motifs may not be rendering corectly Qt Gui closed fixed critical diane 06/25/06
#55 Somehow when reloading an analysis it needs to save threshold / window size Qt Gui closed fixed defect critical diane 06/25/06
#104 Loading a different analysis while a MussaAlignedWindow was open caused a crash Qt Gui closed fixed defect major diane 06/15/06
#99 Percent threshold shouldn't be editable. Qt Gui closed fixed enhancement blocker diane 06/12/06
#97 Help > Mussa Manual... should have warning dialog upon error Qt Gui closed fixed defect minor king 06/12/06

Bionic Mussa

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#25 broke motif colors Qt Gui closed fixed defect major diane 06/28/06
#23 The threshold widget was broken too Qt Gui closed fixed defect major diane 06/28/06
#19 I broke the scrollbar too Qt Gui closed fixed defect major diane 06/28/06
#16 figure out how to get selections to work with new segment based drawing Qt Gui closed fixed defect major diane 06/28/06
#14 Motifs need to be creatable and editable from within the GUI Qt Gui closed fixed defect major diane 06/28/06
#12 modify motifs attached to an analysis Qt Gui closed fixed task major diane 06/28/06
#42 when resizing you should see more basepairs, not make them bigger. Qt Gui closed fixed defect minor diane 06/25/06
#1 Annotation color mapper core closed fixed critical diane 06/25/06
#40 MussaAlignedWindow, left sequence position doesn't get initial value set Qt Gui closed fixed minor diane 06/25/06
#3 View descriptions Qt Gui closed fixed defect major diane 06/25/06
#41 Selection box jumps slightly to the right of the rubber band Qt Gui closed fixed task minor diane 06/25/06
#5 Configure a mussa analysis from the Gui Qt Gui closed fixed defect major king 06/25/06
#72 Myogenin human mouse rat cow chicken files are odd core closed fixed critical diane 06/25/06
#4 Aligned sequence view Qt Gui closed fixed critical diane 06/12/06
#45 recreate os x bless script Qt Gui closed fixed task major diane 05/30/06
#36 Make zoom widget make sense Qt Gui closed fixed defect major diane 05/28/06
#38 Loading a new analysis while an alignment window was open causes segfault Qt Gui closed fixed defect major diane 03/19/06
#32 The trac pages should become the main mussa website other closed fixed task major king 03/17/06
#2 Connection view core closed fixed task major diane 03/15/06
Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#220 mussa command line seems to be broken... core new None 1.0 defect critical diane 10/25/06
#88 Find titus' paper on FR versus the bacterial genomes other assigned None task major diane 10/13/06
#268 files that lack a new line would make the mupa parser choke Qt Gui new None defect major diane 08/02/07
#48 Automate win32 installer build other new None enhancement minor diane 10/13/06
#27 Collect example sequences other closed fixed enhancement minor diane 09/12/06
#121 the load_mupa function choaks when given something other than a file core closed fixed defect major diane 09/08/06
#117 Perhaps our fasta loading file loader could detect if we're being fed an html file. Qt Gui closed fixed defect major diane 08/10/06
#113 For some reason on Ali's machine cmake is linking in X11 Qt Gui closed worksforme defect major diane 07/28/06
#93 Allow opening two analyses at once. Qt Gui closed fixed defect blocker diane 06/27/06
#79 It'd be nice if you could annotate by providing fasta files python interface closed fixed blocker diane 06/25/06
#90 the arrow keys aren't connected to the scrollbar python interface closed fixed defect critical diane 06/25/06
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