| | 1 | Various timing efforts |
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| | 2 | |
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| | 3 | |
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| | 4 | An experiment using a 7 way comparison run on an amd64 2.2 GHz |
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| | 5 | |
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| | 6 | Running with 1 sequence repeat masked |
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| | 7 | |
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| | 8 | diane@brisby:~/proj/mussa_analyses/mck_1repeat/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa |
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| | 9 | |
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| | 10 | real 7m44.508s user 7m43.182s sys 0m0.307s |
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| | 11 | 04/13/06 01:07:58: Modified by diane |
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| | 12 | |
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| | 13 | running with all repeat masked diane@brisby:~/proj/mussa_analyses/mck_repeatmasked/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa |
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| | 14 | |
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| | 15 | real 3m36.728s user 3m35.672s sys 0m0.268s diane@brisby:~/proj/ |
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| | 16 | 05/01/06 17:58:07: Modified by diane |
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| | 17 | |
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| | 18 | I loged out without copying no repeat masking was on the order of 13,500 minutes of real & user time. |
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| | 19 | |
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| | 20 | --- |
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| | 21 | On a 2.0 GHz x86 Mac |
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| | 22 | |
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| | 23 | This is with nothing at all repeat masked. |
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| | 24 | |
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| | 25 | motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck.mupa --no-gui |
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| | 26 | I apologize for blocking the gui while running the analysis |
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| | 27 | |
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| | 28 | real 5m23.544s |
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| | 29 | user 5m11.089s |
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| | 30 | sys 0m6.421s |
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| | 31 | |
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| | 32 | This is with simple and low complexity repeats masked. |
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| | 33 | |
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| | 34 | motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck_simple.mupa --no-gui |
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| | 35 | I apologize for blocking the gui while running the analysis |
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| | 36 | |
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| | 37 | real 0m19.550s |
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| | 38 | user 0m18.929s |
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| | 39 | sys 0m0.457s |
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