Changes between Initial Version and Version 1 of PerformanceNotes


Ignore:
Timestamp:
Jul 14, 2006, 5:02:36 PM (13 years ago)
Author:
diane
Comment:

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  • PerformanceNotes

    v1 v1  
     1Various timing efforts
     2
     3
     4An experiment using a 7 way comparison run on an amd64 2.2 GHz
     5
     6Running with 1 sequence repeat masked
     7
     8diane@brisby:~/proj/mussa_analyses/mck_1repeat/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa
     9
     10real 7m44.508s user 7m43.182s sys 0m0.307s
     1104/13/06 01:07:58: Modified by diane
     12
     13running with all repeat masked diane@brisby:~/proj/mussa_analyses/mck_repeatmasked/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa
     14
     15real 3m36.728s user 3m35.672s sys 0m0.268s diane@brisby:~/proj/
     1605/01/06 17:58:07: Modified by diane
     17
     18I loged out without copying no repeat masking was on the order of 13,500 minutes of real & user time.
     19
     20---
     21On a 2.0 GHz x86 Mac
     22
     23This is with nothing at all repeat masked.
     24
     25motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck.mupa --no-gui
     26I apologize for blocking the gui while running the analysis
     27
     28real    5m23.544s
     29user    5m11.089s
     30sys     0m6.421s
     31
     32This is with simple and low complexity repeats masked.
     33
     34motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck_simple.mupa --no-gui
     35I apologize for blocking the gui while running the analysis
     36
     37real    0m19.550s
     38user    0m18.929s
     39sys     0m0.457s