id Summary Status Type Priority Milestone Component 30 "Allow ""leave one out"" nway transitive searches" new enhancement blocker release_1.2 core 81 Storing and searching metadata new enhancement blocker from __future__ import magic Qt Gui 77 Font needs to be better... new enhancement critical Standing on our heads Qt Gui 82 Unit test python API new enhancement critical unit tests Qt Gui 98 QtAssistant needs to be put in the right place on os x. new enhancement critical Standing on our heads Qt Gui 100 There should be some way to display the annotation name with the annotation track new enhancement critical Standing on our heads Qt Gui 108 Cancel on the progress bar should do something new enhancement critical Standing on our heads Qt Gui 220 mussa command line seems to be broken... new defect critical core 249 darcs tag mussa_1.1.0 new defect critical release_1.1 Qt Gui 263 Compile warnings must die! new defect critical release_1.1 Qt Gui 6 Analysis saving is smelly new task major Standing on our heads core 7 Reuse seqcomps new enhancement major Standing on our heads core 8 Per species thresholds new enhancement major from __future__ import magic core 9 Connect to cartwheel new enhancement major Standing on our heads Qt Gui 13 AnnotationColor mapper needs a user interface new enhancement major Standing on our heads Qt Gui 17 Allow user to specify an offset for base pair location label new enhancement major Standing on our heads Qt Gui 21 Implement a better way of handling the GL selection buffer new task major Standing on our heads core 28 Allow user to force a loaded sequence to be reverse complimented. new enhancement major from __future__ import magic Qt Gui 61 For mac users it'd be useful to make double clicking on a data file actually load mussagl new enhancement major Standing on our heads Qt Gui 65 It'd be neat if you could select a region and go to ucsc new enhancement major Standing on our heads Qt Gui 80 Difference between analyses new enhancement major from __future__ import magic Qt Gui 87 Autodetect threshold new enhancement major from __future__ import magic Qt Gui 88 Find titus' paper on FR versus the bacterial genomes assigned task major other 106 Figure out how to test copySelectedTracks new enhancement major unit tests core 141 Vector output new enhancement major Standing on our heads Qt Gui 145 Use titus' paircomp and motility new enhancement major Standing on our heads core 201 Run analyses in worker thread new enhancement major Standing on our heads core 203 Unit test the code that generates all the mussa filename new enhancement major unit tests core 204 When you resize a mussa window, resize the drawing too. new enhancement major Standing on our heads Qt Gui 205 Add button for autofitting sequence to window new enhancement major release_1.2 Qt Gui 209 Extend the command line parsing to allow fully specifying an analysis new enhancement major Standing on our heads Qt Gui 218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog new enhancement major release_1.2 Qt Gui 219 Reordering sequences in an analysis would be really nice new enhancement major from __future__ import magic Qt Gui 222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure new enhancement major from __future__ import magic Qt Gui 224 Define a common base class between MussaWindow and MussAlignedWindow new enhancement major Standing on our heads Qt Gui 228 Allow more vertical collapse of description widgets new enhancement major release_1.2 Qt Gui 238 Set left offset graphically new enhancement major from __future__ import magic Qt Gui 241 One of the annotations needed is to show where the start of the gene is new enhancement major release_1.2 Qt Gui 242 make really sure people understand how repeatmasking prevents motifs from being shown. new defect major document_1.1 Qt Gui 245 Implement back_inserter for sequence type new enhancement major from __future__ import magic core 248 Test latest build on all platforms new task major release_1.1 Qt Gui 266 Sub-analysis drawing bug (see attached screenshots) new defect major release_1.1 Qt Gui 267 Sequence View soft threshold control non-responsive new defect major release_1.1 Qt Gui 268 files that lack a new line would make the mupa parser choke new defect major Qt Gui 11 create unifed sequence type new enhancement minor Standing on our heads core 18 segments should indicate if they're both forward and reveresed new enhancement minor from __future__ import magic core 29 Connect to Core Match new enhancement minor Standing on our heads core 48 Automate win32 installer build new enhancement minor other 54 Allow compressing repeat regions new enhancement minor from __future__ import magic Qt Gui 112 Sequence logo new enhancement minor from __future__ import magic Qt Gui 123 Allow hiding sidebars new enhancement minor release_1.2 Qt Gui 124 report patch version new enhancement minor release_1.2 core 136 allow absolute positioning new enhancement minor Standing on our heads Qt Gui 155 Include a simple repeat filter new enhancement minor from __future__ import magic core 230 shipit script should ship source distribution too. new enhancement minor release_1.2 other 253 Show conserved window on local alignment display new enhancement minor Standing on our heads Qt Gui 262 ThresholdWidget.reset() SIGNAL/SLOTS issue. new defect minor release_1.2 Qt Gui 89 Blast to find mussa regions new enhancement trivial Standing on our heads core 193 Changing a species name doesn't set dirty flag. new enhancement trivial release_1.2 Qt Gui