|Version 3 (modified by 17 years ago) ( diff ),|
Mussa Prototype Command Line
This refers to the older FLTK version of mussa, for the Qt version type mussa --help to get more information.
Mussa is a command line run python script. The first argument determines the run mode the user wants. prompt> mussa [run mode] [species number] [other args] The remaining arguments depend on the run mode: * 'f' - full analysis, seqcomp, n-way comparisons, and displays (does not save nway results, seqcomp analyses kept in datadir) prompt> mussa f [species number] [config file] [window size] [hard threshold] * 's' - seqcomp batch mode only - runs all the seqcomp analyses prompt> mussa s [species number] [config file] [window size] [hard threshold] * 'n' - n-way comparison only, saves results to file and does not display prompt> mussa n [species number] [datadir] * 'v' - loads n-way comparison, displays results graphically (must have used option 'n' previously) prompt> mussa v [species number] [datadir] * 'nv' - does n-way comparison and displays (does not save n-way comparisons, 'nv' must be used to view again) prompt> mussa nv [species number] [datadir] Future version will have GUI to manage what mode user wants (ie selection screen, the subselections for specifics in terms of files to analyze, load/save, etc - all the things specified by the command line args)