Changes between Version 1 and Version 2 of OverlappingWindows


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Timestamp:
10/13/2006 04:34:21 PM (18 years ago)
Author:
diane
Comment:

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  • OverlappingWindows

    v1 v2  
    77The attached data provides a clearer example of this as the second match isn't that far away. However if one adds more Ns to sequence3 its not too hard to see how it looks like the base pair suddenly stops.
    88
    9 * Download and extract the example data.
    10 * Create an analysis with sequence1.fa sequence2.fa and sequence3_close.fa with a threshold of 21 and a window size of 30.
    11 * see how some of the base pairs connect to the right?
    12 * Create a new analysis whith sequence3_close.fa replaced with sequence3_far.fa, and see how much harder it is to tell that a base pair is matching to a distant window.
     9  * Download and extract the example data.
     10  * Create an analysis with sequence1.fa sequence2.fa and sequence3_close.fa with a threshold of 21 and a window size of 30.
     11  * see how some of the base pairs connect to the right?
     12  * Create a new analysis whith sequence3_close.fa replaced with sequence3_far.fa, and see how much harder it is to tell that a base pair is matching to a distant window.