Changes between Initial Version and Version 1 of PerformanceNotes

Timestamp:

07/14/2006 05:02:36 PM (18 years ago)

Author:

diane

Comment:

--

PerformanceNotes

@@ +1 @@
+Various timing efforts
+
+
+An experiment using a 7 way comparison run on an amd64 2.2 GHz
+
+Running with 1 sequence repeat masked
+
+diane@brisby:~/proj/mussa_analyses/mck_1repeat/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa
+
+real 7m44.508s user 7m43.182s sys 0m0.307s
+04/13/06 01:07:58: Modified by diane
+
+running with all repeat masked diane@brisby:~/proj/mussa_analyses/mck_repeatmasked/ChCoDoHuMoOpRa$ time ~/proj/mussa/build64/qui/mussagl --no-gui --run mck_w20_t14.mupa
+
+real 3m36.728s user 3m35.672s sys 0m0.268s diane@brisby:~/proj/
+05/01/06 17:58:07: Modified by diane
+
+I loged out without copying no repeat masking was on the order of 13,500 minutes of real & user time.
+
+---
+On a 2.0 GHz x86 Mac
+
+This is with nothing at all repeat masked.
+
+motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck.mupa --no-gui
+I apologize for blocking the gui while running the analysis
+
+real    5m23.544s
+user    5m11.089s
+sys     0m6.421s
+
+This is with simple and low complexity repeats masked.
+
+motoko:~/proj/mussa_analyses/mck_1repeat/HuMoRa diane$ time ~/proj/mussa/build/qui/mussagl.app/Contents/MacOS/mussagl --run mck_simple.mupa --no-gui
+I apologize for blocking the gui while running the analysis
+
+real    0m19.550s
+user    0m18.929s
+sys     0m0.457s