= MussaGL 1.1.0 =

== Highlight of New Features ==

  * N's in sequence are drawing in a light gray
    * Now you can see where N's exist in your sequence.
  * Scrollable main window
    * Allows for scrolling when the number of sequences is greater than the available drawing space.
  * Sequence Properties ([485], [488], [489])
    * Allows for choosing the location to draw an individual sequence given an offset.
  * Escape key clears sequence browser selection. (#212, [553])
  * Mouse wheel now can be used to zoom in & out. (#252, [651])
  * More meaningful error messages when loading annotations. (#239, [515])
  * File saving and parsing improvements.

== Additional New Features ==

  * Saved analyses now save and load current soft threshold (#257, [557])
  * Additional "What's This?" documentation ([518], [519])
  * Qt version displayed in about box ([517])

== Application Architecture Improvements ==

  * Core sequence classes refactored.
  * Annotation code refactored.
  * Use of boost::shared_ptr to minimize memory leaks.
  * Additional unit tests
  * Started integrating paircomp by allowing mussa to build paircomp ([503])

== Bug Fixes ==

  * Sub-analysis failure to draw on init fix (#254, [524])
  * Save to image crash fix (#251, [523])
  * Loading saved analysis improved (#240, [554]
  * More accepting of OS acceptable file names (#237, [485])
  * Added -fPIC when building on 64-bit machines ([508])
  * Motifs are no longer lost after closing motif window (#195, [516])
  * General stabilization and other bug fixes.


== Release 1.1.0 Tickets ==

[[TicketQuery(milestone=release_1.1)]]