id	Summary	Owner	Type	Priority	Component	Version
156	Mussa manual - meta ticket	king	task	major	other	
157	Mussa manual: document 'save to image' feature	king	task	major	other	
161	Add link to smn1 example data (since the UCSC tutorial is based on it)	king	task	major	other	1.0
164	Include a section on creating a .mupa file using the smn1 data.	king	task	major	other	1.0
166	Update Mussa summary screenshot to latest version	king	task	major	other	
167	"Add an ""Understanding Mussa"" section to manual."	king	task	major	other	1.0
168	Mussa manual: Update Mac OS X install instructions	king	task	major	other	1.0
169	"Update ""New Analysis"" section as the Dialog box has changed."	king	task	major	other	1.0
170	After implementing ticket:164, update 'Load Mupa' section to link to SMN1 example .mupa.	king	task	major	other	1.0
171	"Remove the ""Motif Toggle"" button from manual."	king	defect	major	other	1.0
172	"Update ""Dynamic Threshold"" section as the widget has changed."	king	enhancement	major	other	1.0
174	Confirm file formats are documented and correct.	diane	task	major	other	1.0
175	Document new 'save motifs' feature.	king	task	major	other	1.0
176	Document 'Save Analysis' and 'Save Analysis As' features.	king	task	major	other	1.0
178	Update all screenshots to latest version of Mussa.	king	task	major	other	1.0
179	"Add a section on ""File > New Mussa Window"" feature."	king	task	major	other	1.0
181	Update 'Load a mussa parameter file' section	king	task	major	other	
185	"Update ""Load an analysis"" section (text/screenshots)"	king	task	major	other	1.0
189	"Document ""save on close"" section after close of ticket:187"	king	task	major	other	1.0
191	"Update ""Motif Dialog"" section"	king	enhancement	major	other	1.0
196	Motif editor: document how to delete a motif	king	enhancement	major	other	1.0
227	Document Python useage in Mussagl	king	task	major	Qt Gui	1.0
152	Update mussa_manual.adp to latest tutorial version	king	task	minor	other	
162	Mussa manual: Update major new features section	king	task	minor	other	1.0
173	"Update ""Sequence Information Bar"" section, as it has changed in latest version."	king	enhancement	minor	other	1.0
177	Confirm description of blue conservation tracks is correct.	diane	task	minor	other	1.0
190	Update 'save motifs' section after close of ticket #188.	king	task	minor	other	1.0
213	Document how to deselect tracks/paths	king	task	minor	Qt Gui	1.0
214	Document why sub-analysis exists	king	enhancement	minor	other	1.0
225	Document mussagl command line option	king	task	minor	Qt Gui	1.0
137	Document why Base pair match lines on the sequence view don't always connect all the sequences	diane	task	trivial	other	
153	Allow users to specify the file load file mask	king	task	trivial	Qt Gui