id Summary Status Owner Type Milestone Priority 6 Analysis saving is smelly new diane task Standing on our heads major 7 Reuse seqcomps new diane enhancement Standing on our heads major 8 Per species thresholds new diane enhancement from __future__ import magic major 9 Connect to cartwheel new diane enhancement Standing on our heads major 13 AnnotationColor mapper needs a user interface new diane enhancement Standing on our heads major 17 Allow user to specify an offset for base pair location label new diane enhancement Standing on our heads major 21 Implement a better way of handling the GL selection buffer new diane task Standing on our heads major 28 Allow user to force a loaded sequence to be reverse complimented. new diane enhancement from __future__ import magic major 61 For mac users it'd be useful to make double clicking on a data file actually load mussagl new diane enhancement Standing on our heads major 65 It'd be neat if you could select a region and go to ucsc new diane enhancement Standing on our heads major 80 Difference between analyses new diane enhancement from __future__ import magic major 87 Autodetect threshold new diane enhancement from __future__ import magic major 88 Find titus' paper on FR versus the bacterial genomes assigned diane task major 106 Figure out how to test copySelectedTracks new diane enhancement unit tests major 141 Vector output new diane enhancement Standing on our heads major 145 Use titus' paircomp and motility new diane enhancement Standing on our heads major 198 Document the multi add to sub-analysis feature. new king task document_1.1 major 201 Run analyses in worker thread new diane enhancement Standing on our heads major 202 Investigate SIP instead of boost::python new king task Standing on our heads major 203 Unit test the code that generates all the mussa filename new diane enhancement unit tests major 204 When you resize a mussa window, resize the drawing too. new diane enhancement Standing on our heads major 205 Add button for autofitting sequence to window new diane enhancement release_1.2 major 209 Extend the command line parsing to allow fully specifying an analysis new diane enhancement Standing on our heads major 218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog new diane enhancement release_1.2 major 219 Reordering sequences in an analysis would be really nice new diane enhancement from __future__ import magic major 221 Discover/document effect of ordering species on analysis run times. new king task document_1.1 major 222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure new diane enhancement from __future__ import magic major 224 Define a common base class between MussaWindow and MussAlignedWindow new diane enhancement Standing on our heads major 228 Allow more vertical collapse of description widgets new diane enhancement release_1.2 major 232 Document the report bp copied number. new king task document_1.1 major 234 Document * in title when there are unsaved changes new king task document_1.1 major 238 Set left offset graphically new diane enhancement from __future__ import magic major 241 One of the annotations needed is to show where the start of the gene is new diane enhancement release_1.2 major 242 make really sure people understand how repeatmasking prevents motifs from being shown. new diane defect document_1.1 major 245 Implement back_inserter for sequence type new diane enhancement from __future__ import magic major 248 Test latest build on all platforms new diane task release_1.1 major 258 document new escape to clear selection new king task document_1.1 major 264 Document sequence properties new king task document_1.1 major 266 Sub-analysis drawing bug (see attached screenshots) new diane defect release_1.1 major 267 Sequence View soft threshold control non-responsive new diane defect release_1.1 major 268 files that lack a new line would make the mupa parser choke new diane defect major