|
#6
|
Analysis saving is smelly
|
core
|
|
Standing on our heads
|
task
|
diane
|
new
|
20 years ago
|
|
#7
|
Reuse seqcomps
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#8
|
Per species thresholds
|
core
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#9
|
Connect to cartwheel
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#11
|
create unifed sequence type
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#13
|
AnnotationColor mapper needs a user interface
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#17
|
Allow user to specify an offset for base pair location label
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#18
|
segments should indicate if they're both forward and reveresed
|
core
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#21
|
Implement a better way of handling the GL selection buffer
|
core
|
|
Standing on our heads
|
task
|
diane
|
new
|
20 years ago
|
|
#28
|
Allow user to force a loaded sequence to be reverse complimented.
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#29
|
Connect to Core Match
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#30
|
Allow "leave one out" nway transitive searches
|
core
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#48
|
Automate win32 installer build
|
other
|
|
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#54
|
Allow compressing repeat regions
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#61
|
For mac users it'd be useful to make double clicking on a data file actually load mussagl
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#65
|
It'd be neat if you could select a region and go to ucsc
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#77
|
Font needs to be better...
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#80
|
Difference between analyses
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#81
|
Storing and searching metadata
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#82
|
Unit test python API
|
Qt Gui
|
|
unit tests
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#87
|
Autodetect threshold
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#88
|
Find titus' paper on FR versus the bacterial genomes
|
other
|
|
|
task
|
diane
|
assigned
|
20 years ago
|
|
#89
|
Blast to find mussa regions
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#98
|
QtAssistant needs to be put in the right place on os x.
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#100
|
There should be some way to display the annotation name with the annotation track
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#106
|
Figure out how to test copySelectedTracks
|
core
|
|
unit tests
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#108
|
Cancel on the progress bar should do something
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#112
|
Sequence logo
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#123
|
Allow hiding sidebars
|
Qt Gui
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#124
|
report patch version
|
core
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#136
|
allow absolute positioning
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#141
|
Vector output
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#145
|
Use titus' paircomp and motility
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#155
|
Include a simple repeat filter
|
core
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#159
|
Create track macro to display changelog with build numbers
|
other
|
1.0
|
from __future__ import docs
|
task
|
king
|
new
|
20 years ago
|
|
#165
|
Include a section on creating a motif list file using the smn1 data.
|
other
|
1.0
|
from __future__ import docs
|
task
|
king
|
new
|
20 years ago
|
|
#193
|
Changing a species name doesn't set dirty flag.
|
Qt Gui
|
1.0
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#198
|
Document the multi add to sub-analysis feature.
|
Qt Gui
|
1.0
|
document_1.1
|
task
|
king
|
new
|
20 years ago
|
|
#201
|
Run analyses in worker thread
|
core
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#202
|
Investigate SIP instead of boost::python
|
Qt Gui
|
|
Standing on our heads
|
task
|
king
|
new
|
20 years ago
|
|
#203
|
Unit test the code that generates all the mussa filename
|
core
|
|
unit tests
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#204
|
When you resize a mussa window, resize the drawing too.
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#205
|
Add button for autofitting sequence to window
|
Qt Gui
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#209
|
Extend the command line parsing to allow fully specifying an analysis
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#218
|
Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog
|
Qt Gui
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#219
|
Reordering sequences in an analysis would be really nice
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#220
|
mussa command line seems to be broken...
|
core
|
1.0
|
|
defect
|
diane
|
new
|
20 years ago
|
|
#221
|
Discover/document effect of ordering species on analysis run times.
|
core
|
1.0
|
document_1.1
|
task
|
king
|
new
|
20 years ago
|
|
#222
|
Allow hyperlink annotations for CDS to PyMol rendering of protein structure
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#224
|
Define a common base class between MussaWindow and MussAlignedWindow
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#228
|
Allow more vertical collapse of description widgets
|
Qt Gui
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#230
|
shipit script should ship source distribution too.
|
other
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#231
|
Document copy and paste into motif editor now functional.
|
Qt Gui
|
|
document_1.1
|
task
|
king
|
new
|
20 years ago
|
|
#232
|
Document the report bp copied number.
|
Qt Gui
|
|
document_1.1
|
task
|
king
|
new
|
20 years ago
|
|
#234
|
Document * in title when there are unsaved changes
|
Qt Gui
|
|
document_1.1
|
task
|
king
|
new
|
20 years ago
|
|
#238
|
Set left offset graphically
|
Qt Gui
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#241
|
One of the annotations needed is to show where the start of the gene is
|
Qt Gui
|
|
release_1.2
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#242
|
make really sure people understand how repeatmasking prevents motifs from being shown.
|
Qt Gui
|
|
document_1.1
|
defect
|
diane
|
new
|
20 years ago
|
|
#245
|
Implement back_inserter for sequence type
|
core
|
|
from __future__ import magic
|
enhancement
|
diane
|
new
|
20 years ago
|
|
#248
|
Test latest build on all platforms
|
Qt Gui
|
|
release_1.1
|
task
|
diane
|
new
|
19 years ago
|
|
#249
|
darcs tag mussa_1.1.0
|
Qt Gui
|
|
release_1.1
|
defect
|
diane
|
new
|
19 years ago
|
|
#253
|
Show conserved window on local alignment display
|
Qt Gui
|
|
Standing on our heads
|
enhancement
|
diane
|
new
|
19 years ago
|
|
#258
|
document new escape to clear selection
|
Qt Gui
|
|
document_1.1
|
task
|
king
|
new
|
19 years ago
|
|
#262
|
ThresholdWidget.reset() SIGNAL/SLOTS issue.
|
Qt Gui
|
|
release_1.2
|
defect
|
diane
|
new
|
19 years ago
|
|
#263
|
Compile warnings must die!
|
Qt Gui
|
|
release_1.1
|
defect
|
diane
|
new
|
19 years ago
|
|
#264
|
Document sequence properties
|
other
|
|
document_1.1
|
task
|
king
|
new
|
19 years ago
|
|
#266
|
Sub-analysis drawing bug (see attached screenshots)
|
Qt Gui
|
|
release_1.1
|
defect
|
diane
|
new
|
19 years ago
|
|
#267
|
Sequence View soft threshold control non-responsive
|
Qt Gui
|
|
release_1.1
|
defect
|
diane
|
new
|
19 years ago
|
|
#268
|
files that lack a new line would make the mupa parser choke
|
Qt Gui
|
|
|
defect
|
diane
|
new
|
19 years ago
|
