id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc
10	Integrate motifs with annotations	diane	diane	"The old code treated motifis and annotations differently. I think motif searching should generate annotations, which can then use the AnnotationColors color mapper to define what the color for that motif should be.

One might argue that there are usually many more motifs found for a sequence and that'll be too much of a slow down, but I suspect its not going to be a big issue, and the unification of the code paths (and user interface for modifying colors) will be a big win."	defect	closed	major	Standing on our heads	core		duplicate