id	summary	reporter	owner	description	type	status	priority	milestone	component	version	resolution	keywords	cc
253	Show conserved window on local alignment display	diane	diane	"It might be useful to show the windows that were aligned on the local alignment display, since the local alignments are only done within those windows. 

This might make it a bit easier to see the limitations of what was matched."	enhancement	new	minor	Standing on our heads	Qt Gui