close Warning: AdminModule failed with TracError: Unable to instantiate component <class 'trac.admin.web_ui.LoggingAdminPanel'> (super(type, obj): obj (type LoggingAdminPanel) is not an instance or subtype of type (Markup).)

Timeline



Nov 17, 2006:

3:42 PM Ticket #237 (Crashing with invalid file name) closed by diane
fixed: closed by [485]. Boost::Filesystem is picky, I really need to remember …

Nov 16, 2006:

4:57 PM Ticket #237 (Crashing with invalid file name) created by diane
Some character in the name …

Nov 14, 2006:

1:48 PM Milestone release_1.0 completed
This is for things that need to be done for "release 1.0"
1:48 PM Milestone document_1.0 completed
finish off updating the documentation for our initial release.

Nov 2, 2006:

4:39 PM WikiFormatting edited by trac
(diff)
4:39 PM TracSearch edited by trac
(diff)
4:39 PM WikiProcessors edited by trac
(diff)
4:39 PM TracTimeline edited by trac
(diff)
4:39 PM WikiRestructuredTextLinks edited by trac
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4:39 PM TracBrowser edited by trac
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4:39 PM TracCgi edited by trac
(diff)
4:39 PM TracIni edited by trac
(diff)
4:39 PM TracRss edited by trac
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4:39 PM TracBackup edited by trac
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4:39 PM TracPermissions edited by trac
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4:39 PM TracImport edited by trac
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4:39 PM TracInstall edited by trac
(diff)
4:39 PM TracPlugins edited by trac
(diff)
4:39 PM TracSyntaxColoring edited by trac
(diff)
4:39 PM TracLinks edited by trac
(diff)
4:39 PM InterTrac created by trac
4:39 PM InterWiki created by trac
4:39 PM TracQuery edited by trac
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4:39 PM TracUnicode edited by trac
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4:39 PM TracUpgrade edited by trac
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4:39 PM WikiNewPage edited by trac
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4:39 PM TracWiki edited by trac
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4:39 PM TracSupport edited by trac
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4:39 PM InterMapTxt created by trac
4:39 PM TracStandalone edited by trac
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4:39 PM TracRevisionLog created by trac
4:39 PM TracInterfaceCustomization edited by trac
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4:39 PM TracAdmin edited by trac
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4:39 PM WikiHtml edited by trac
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4:39 PM WikiPageNames edited by trac
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4:39 PM WikiRestructuredText edited by trac
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4:39 PM CamelCase edited by trac
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4:39 PM TracTickets edited by trac
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4:39 PM TracFastCgi edited by trac
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4:39 PM WikiMacros edited by trac
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4:39 PM TracAccessibility edited by trac
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4:39 PM TracTicketsCustomFields edited by trac
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4:39 PM TracNotification edited by trac
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4:39 PM TracRoadmap edited by trac
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4:39 PM WikiDeletePage edited by trac
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4:39 PM TracChangeset edited by trac
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4:39 PM TracEnvironment edited by trac
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4:39 PM TracReports edited by trac
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4:39 PM TracModPython edited by trac
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Nov 1, 2006:

3:56 PM WikiStart edited by king
(diff)
3:55 PM WikiStart edited by king
(diff)
3:42 PM WikiStart edited by king
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3:41 PM WikiStart edited by king
(diff)
3:41 PM WikiStart edited by king
(diff)
3:25 PM WikiStart edited by king
(diff)
3:07 PM WikiStart edited by king
Describe binary builds (diff)
1:15 PM WikiStart edited by king
(diff)
1:14 PM WikiStart edited by king
Prepping for wiki for offical 1.0 release (diff)
10:10 AM Ticket #235 (set version to 1.0 in version.h) closed by king
fixed: Changeset [481]
9:49 AM Ticket #152 (Update mussa_manual.adp to latest tutorial version) closed by king
fixed: Done in change set [478].

Oct 30, 2006:

12:52 PM Ticket #236 (Error parsing annotation file should also include the filename in the ...) closed by diane
fixed: [474] implements this.
12:22 PM Ticket #158 (When unable to parse a fasta file report its name) closed by diane
fixed
10:56 AM Ticket #236 (Error parsing annotation file should also include the filename in the ...) created by diane
Much like ticket:158
10:47 AM Ticket #210 (see about removing some of the wasted border width on the sidebars) closed by diane
wontfix: Eh, this isn't worth it. Use the hide sidebar option.

Oct 27, 2006:

6:57 PM Ticket #182 (Mussa views need vertical scrolls) closed by diane
fixed: [470] changes SequenceBrowserWidget to inherit from QScrollArea. the …
6:56 PM Ticket #233 (when first displaying mussa the tracks aren't sized to the available ...) closed by diane
fixed: [469] brute forces a sizeHint to make this work.
6:22 PM Ticket #235 (set version to 1.0 in version.h) created by diane
when releasing lets set the version number.
6:08 PM Ticket #213 (Document how to deselect tracks/paths) closed by king
fixed: Done in change set [467].
6:08 PM Ticket #170 (After implementing ticket:164, update 'Load Mupa' section to link to ...) closed by king
fixed: Done in change set [467].
5:58 PM Ticket #225 (Document mussagl command line option) closed by king
fixed: Done in change set [465].
5:56 PM Ticket #162 (Mussa manual: Update major new features section) closed by king
fixed
5:55 PM Ticket #168 (Mussa manual: Update Mac OS X install instructions) closed by king
fixed: Done in change set [466].
5:55 PM Ticket #214 (Document why sub-analysis exists) closed by king
fixed: Done in change set [466].
5:54 PM Ticket #234 (Document * in title when there are unsaved changes) created by king
See ticket:194.
5:53 PM Ticket #233 (when first displaying mussa the tracks aren't sized to the available ...) created by diane
little bits of the sequence is hidden by the sidebars for some unknown …
5:52 PM Ticket #232 (Document the report bp copied number.) created by king
See ticket #211 for more information.
5:50 PM Ticket #231 (Document copy and paste into motif editor now functional.) created by king
5:31 PM Ticket #137 (Document why Base pair match lines on the sequence view don't always ...) closed by king
fixed: Done in change set [465].
5:30 PM Ticket #227 (Document Python useage in Mussagl) closed by king
fixed: Done in change set [465].
5:30 PM Ticket #167 (Add an "Understanding Mussa" section to manual.) closed by king
fixed: Done in change set [465].
5:29 PM Ticket #164 (Include a section on creating a .mupa file using the smn1 data.) closed by king
fixed: Done in change set [465].
5:24 PM Ticket #178 (Update all screenshots to latest version of Mussa.) closed by king
fixed: Done
4:37 PM MussaglAnimated edited by king
(diff)
4:37 PM mussagl_animation_large.gif attached to MussaglAnimated by king
Mussagl threshold in action.
4:33 PM MussaglAnimated created by king
4:26 PM WikiStart edited by king
testing (diff)
4:24 PM mussagl_animation.gif attached to WikiStart by king
Mussagl in action.
3:37 PM Ticket #230 (shipit script should ship source distribution too.) created by diane
3:36 PM Ticket #229 (Package Everything for 1.0) created by diane
Include documentation and a source distribution.
2:22 PM Ticket #228 (Allow more vertical collapse of description widgets) created by diane
In order to cram more tracks on a screen, we might want to be allowed …
2:13 PM Ticket #217 (Use QtDesktopServices for openURL) closed by diane
fixed: Implemented in [464]. Also this means we dependon Qt 4.2, but loose …
11:00 AM Ticket #194 (use window feedback to show that there are unsaved changes) closed by diane
fixed: [463] implemented
10:48 AM WikiStart edited by king
Added some contact information. (diff)
10:44 AM Ticket #227 (Document Python useage in Mussagl) created by king
It might be useful to let people know there is some features for …
10:33 AM WikiStart edited by king
Try to include some contact information... js test. (diff)
10:17 AM Ticket #226 (QtTest is now a framework) created by diane
Need to update cmakes scripts to handle qt 4.2

Oct 26, 2006:

4:13 PM Ticket #225 (Document mussagl command line option) created by king
It would be useful to document the Mussa command line options.
3:33 PM Ticket #215 (You should be able to paste into the motif editor) closed by diane
fixed: Resolved [461] (it was actually a problem with the copy always being a …
3:05 PM Ticket #224 (Define a common base class between MussaWindow and MussAlignedWindow) created by diane
I'm starting to duplicate code between the two classes like copying …
1:47 PM Ticket #211 (Report how many basepairs are copied) closed by diane
fixed: The basic version that reports the sum of base pairs copied was …
10:14 AM Ticket #223 (Set the Window Icon to be the Mussa icon) closed by king
fixed: Done in change set [459].
10:13 AM Ticket #223 (Set the Window Icon to be the Mussa icon) created by king
Mussa Window + Icon = Finding minimized Mussa easier.

Oct 25, 2006:

5:12 PM Ticket #222 (Allow hyperlink annotations for CDS to PyMol rendering of protein structure) created by diane
Especially with highlighting where the chunk of dna shows up on protein.
3:30 PM Ticket #221 (Discover/document effect of ordering species on analysis run times.) created by king
Discover/document effect of ordering species on analysis run times.
2:00 PM Ticket #220 (mussa command line seems to be broken...) created by king
I have been trying to run mupa files from the command line, but it …

Oct 24, 2006:

5:12 PM Ticket #219 (Reordering sequences in an analysis would be really nice) created by diane
Gee I wish I could click on a sequence track and drag it into a …
2:25 PM Ticket #207 (Reenable GUI tests) closed by diane
fixed
2:21 PM Ticket #218 (Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog) created by diane
One fo the neat new features of 4.2 was it had a way of putting …
1:47 PM Ticket #217 (Use QtDesktopServices for openURL) created by diane
Qt 4.2 has an openURL command

Oct 23, 2006:

5:46 PM Ticket #216 (subanalysis doesn't call setSoftThreshold to after finishing analysis) closed by diane
fixed: fixed in [456]
Note: See TracTimeline for information about the timeline view.