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4:10 PM Ticket #112 (Sequence logo) created by diane: It'd be neat if the mussa analysis could show a "sequence logo", the …
12:04 PM WikiStart edited by king: added link to user guide (diff)

3:33 PM Ticket #111 (Set zero/alignment point for a sequence) created by diane: You might want the sequence view to align someplace other than the …

12:32 PM Ticket #110 (Running a subanalysis with nothing loaded causes the program to crash) closed by diane: fixed: Should be fixed in [287] by making the subanalysis run button disable …
11:58 AM Ticket #110 (Running a subanalysis with nothing loaded causes the program to crash) created by diane: (at least according to brandon)
11:57 AM Ticket #109 (Subanalysis sequence list wasn't being cleared) closed by diane: fixed: Fixed [285] Might help to call .clear() instead of .pop_back(), …
11:56 AM Ticket #109 (Subanalysis sequence list wasn't being cleared) created by diane

12:00 AM Ticket #20 (Toggle Motif Button Implementation) closed by diane: fixed: The new checkboxes implemented in [276] for ticket:92 is basically …

11:57 PM Ticket #26 (SubAnalysis mode) closed by diane: fixed: Fully implemented in [283]

5:35 PM Ticket #71 (AnnotationColors don't always color motifs correctly) closed by diane: worksforme: Actually I think that's just the zoom being weird, sometimes resizing …
5:32 PM Ticket #92 (Allow one to temporarily disable a motif) closed by diane: fixed: Implemented (though without any gui labels) in [276]
2:41 PM Ticket #95 (Annotations masked out when motif defined and then undefined.) closed by diane: fixed: fixed [274]

5:40 PM Ticket #33 (changing threshold can cause the UI to freeze) closed by diane: fixed: There's now a progress bar which gives the user the sense of that the …
5:34 PM Ticket #108 (Cancel on the progress bar should do something) created by diane: A simple answer is to call exit()
5:13 PM Ticket #51 (Copying sequence might be useful) closed by diane: fixed: dont feel like looking up when i implemented this, but it certainly …
12:40 PM Ticket #102 (Update "blocking the gui" comment in --no-gui mode.) closed by diane: wontfix: MUSSA stands for Make Ur System Suffer Always. Though perhaps I …

9:15 PM Ticket #107 (Motifs don't show up on the Mussa Aligned Sequence window anymore.) created by diane: somehow I recently broke the view AlignedSequence window.
7:17 PM Ticket #106 (Figure out how to test copySelectedTracks) created by diane: I need to figure out some way to programmatically set a selection so I …

3:15 PM Ticket #105 (Load Analysis should spawn a new window) created by diane: When Barbara tried to use Mussa she tried to use the load menu like …

5:33 PM Ticket #104 (Loading a different analysis while a MussaAlignedWindow was open ...) closed by diane: fixed: [259] fixed. boost::shared_ptr and std::auto_ptr are useful things. I …
5:28 PM Ticket #104 (Loading a different analysis while a MussaAlignedWindow was open ...) created by diane

6:51 PM Ticket #103 (Motifs need a name field) created by king: Motifs should have a name field in addition to the actual motif. This …
5:29 PM Ticket #102 (Update "blocking the gui" comment in --no-gui mode.) created by king: When in --no-gui mode, the comment "I apologize for blocking the gui …

3:08 PM Ticket #99 (Percent threshold shouldn't be editable.) closed by diane: fixed: Fixed. recenty. Not sure what version…

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