= Mussa = 

Multi-Species Sequence Analysis

We be plundering the High Sequence Seas
For the hidden Treasures of Conservation

== About Mussa ==

Mussa is an N-way version of the [http://family.caltech.edu/ FamilyRelations] (which is apart of the [http://cartwheel.idyll.org/ Cartwheel] project) 2-way comparative sequence analysis software. Given DNA sequence from N species, Mussa uses all possible pairwise comparions to derive an N-wise comparison. For example, given sequences 1,2,3, and 4, Mussa makes 6 2-way comparisons: 1vs2, 1vs3, 1vs4, 2vs3, 2vs4, and 3vs4. It then compares all the links between these comparisons, saving those that satisfy a [wiki:transitivity transitivity requirement]. The saved paths are then displayed in an interactive viewer. 

== Download ==

|| '''Application''' || '''Version''' || '''License''' || '''Linux (Binary)''' || '''Mac OS X (Binary)''' || '''Windows XP (Binary)''' || '''Source''' || '''Version Control''' ||
|| Mussagl || pre-release || [http://www.opensource.org/licenses/gpl-license.php GPL v2] || N/A || [http://mus.caltech.edu/~diane/proj/ Mac OS X Installer] || [http://woldlab.caltech.edu/~king/mussagl/ Win32 Installer] || See Version Control || [wiki:darcs darcs] ||

== Documentation ==
 * Mussagl User Guide (Coming Soon)
 * [/cgi-bin/mussa/roadmap Developement Roadmap]

 * [wiki:darcs Checking out Mussagl from Revision Control]
 * [/cgi-bin/mussa/timeline?daysback=90&changeset=on Recent Mussagl Changes in Revision Control]
 * [wiki:MussaglBuild Building Mussagl from Source]

== Feature Requests / Bugs ==

 * [/cgi-bin/mussa/newticket Submit a new feature request/bug ticket]
 * [report:3 View existing tickets]

== Older Mussa Versions ==

 * [wiki:MussaFltk Mussa] - C++/FLTK Version 
 * [wiki:MussaProtoype Mussa Prototype (Retired)] - Python/PMW Version

== Development Credits ==

 * Mussagl: Diane Trout with assitance from Brandon King (Core algorithms retained from Mussa (C++/FLTK) )
 * C++/FLTK conversion: Tristan De Buysscher with assistance from [http://chabry.caltech.edu/~t/ Titus Brown]
 * Python/PMW prototype: [http://joiry.net/ Tristan De Buysscher] & Nora Mullaney
 * Slavemaster Gangboss: [http://wormbase.org/db/misc/person?name=WBPerson567;class=Person Erich Schwarz]
 * Slavemaster Overlords: [http://woldlab.caltech.edu/ Barbara Wold], [http://www.cco.caltech.edu/%7Ewormlab/ Paul Sternberg ]

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