Mussa

Multi-Species Sequence Analysis

We be plundering the High Sequence Seas For the hidden Treasures of Conservation

About Mussa

Mussa is an N-way version of the ​FamilyRelations (which is a part of the ​Cartwheel project) 2-way comparative sequence analysis software. Given DNA sequence from N species, Mussa uses all possible pairwise comparions to derive an N-wise comparison. For example, given sequences 1,2,3, and 4, Mussa makes 6 2-way comparisons: 1vs2, 1vs3, 1vs4, 2vs3, 2vs4, and 3vs4. It then compares all the links between these comparisons, saving those that satisfy a transitivity requirement. The saved paths are then displayed in an interactive viewer.

Download

Application	Version	License	Linux (Binary)	Mac OS X (Binary)	Windows XP (Binary)	Source	Version Control
Mussagl	pre-release	​GPL v2	N/A	​Mac OS X Installer	​Win32 Installer	See Version Control	darcs

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Documentation

• ​Mussagl User Guide
• Mussagl Video Tutorials - Work in Progress
• Example Data
• Developement Roadmap

• Checking out Mussagl from Revision Control
• Recent Mussagl Changes in Revision Control
• Building Mussagl from Source

• PerformanceNotes

Feature Requests / Bugs

• Submit a new feature request/bug ticket
• View existing tickets

Older Mussa Versions

• Mussa - C++/FLTK Version
• Mussa Prototype (Retired) - Python/PMW Version

Development Credits

• Mussagl: Diane Trout with assitance from Brandon King (Core algorithms retained from Mussa (C++/FLTK) )
• C++/FLTK conversion: Tristan De Buysscher with assistance from ​Titus Brown
• Python/PMW prototype: ​Tristan De Buysscher & Nora Mullaney
• Consulting User: ​Erich Schwarz
• Principal Investigators: ​Barbara Wold, ​Paul Sternberg

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