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Mussa
Multi-Species Sequence Analysis
We be plundering the High Sequence Seas For the hidden Treasures of Conservation
About Mussa
Mussa is an N-way version of the FamilyRelations (which is a part of the Cartwheel project) 2-way comparative sequence analysis software. Given DNA sequence from N species, Mussa uses all possible pairwise comparions to derive an N-wise comparison. For example, given sequences 1,2,3, and 4, Mussa makes 6 2-way comparisons: 1vs2, 1vs3, 1vs4, 2vs3, 2vs4, and 3vs4. It then compares all the links between these comparisons, saving those that satisfy a transitivity requirement. The saved paths are then displayed in an interactive viewer.
Download
Currently, we provide two types of binary releases for Mussagl. The first is a development build and the second is a stable release build.
Development Builds - New builds are made as new features / bug fixes are implemented. Many times these builds will be stable, but from time to time, a new feature will break something. Please report any bugs you find and hopefully we will be able to fix the bug and make a new build in a timely fashion.
Stable Releases - Stable releases are made when milestones have been reached and has been tested by our various test users.
Source - The source is available as well. Compiling from sources is currently the only way to get a Linux build. Binary versions maybe made available in the future, most likely Debian packages. See darcs section of the wiki for information on downloading the source.
Stable Releases:
Application | Version | Release Date | License | Mac OS X (Binary) | Windows XP (Binary) | Source (Linux/Mac/Win) | Version Control | darcs tag |
Mussagl | 1.0.0 | Nov. 1st, 2006 | GPL v2 | Available later today | Win32 Installer | Source (.tar.gz) | darcs | mussa_1.0.0 |
Mussagl | development builds | See development builds above | GPL v2 | See development builds above | See development builds above | See Version Control | darcs | N/A |
Contact
If you would like to contact us about Mussagl, feel free to e-mail one or both of us:
- Diane Trout <diane (at) caltech.edu>
- Brandon King <kingb (at) caltech.edu>
Documentation
- Mussagl User Guide
- Mussagl Video Tutorials - Work in Progress
- Example Data
- Developement Roadmap
- Checking out Mussagl from Revision Control
- Recent Mussagl Changes in Revision Control
- Building Mussagl from Source
Feature Requests / Bugs
Older Mussa Versions
- Mussa - C++/FLTK Version
- Mussa Prototype (Retired) - Python/PMW Version
Development Credits
- Mussagl: Diane Trout with assitance from Brandon King (Core algorithms retained from Mussa (C++/FLTK) )
- C++/FLTK conversion: Tristan De Buysscher with assistance from Titus Brown
- Python/PMW prototype: Tristan De Buysscher & Nora Mullaney
- Consulting User: Erich Schwarz
- Principal Investigators: Barbara Wold, Paul Sternberg
Attachments (1)
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mussagl_animation.gif
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Mussagl in action.
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