Mussa

Multi-Species Sequence Analysis

We be plundering the High Sequence Seas For the hidden Treasures of Conservation

About Mussa

Mussa is an N-way version of the ​FamilyRelations (which is a part of the ​Cartwheel project) 2-way comparative sequence analysis software. Given DNA sequence from N species, Mussa uses all possible pairwise comparions to derive an N-wise comparison. For example, given sequences 1,2,3, and 4, Mussa makes 6 2-way comparisons: 1vs2, 1vs3, 1vs4, 2vs3, 2vs4, and 3vs4. It then compares all the links between these comparisons, saving those that satisfy a transitivity requirement. The saved paths are then displayed in an interactive viewer.

Download

Currently, we provide two types of binary releases for Mussagl. The first is a development build and the second is a stable release build.

Development Builds - New builds are made as new features / bug fixes are implemented. Many times these builds will be stable, but from time to time, a new feature will break something. Please report any bugs you find and hopefully we will be able to fix the bug and make a new build in a timely fashion.

Stable Releases - Stable releases are made when milestones have been reached and has been tested by our various test users.

Source - The source is available as well. Compiling from sources is currently the only way to get a Linux build. Binary versions maybe made available in the future, most likely Debian packages. See darcs section of the wiki for information on downloading the source.

LatestBinaryBuild

Stable Releases:

Application	Version	Release Date	License	Mac OS X (Binary)	Windows XP (Binary)	Source (Linux/Mac/Win)	Version Control	darcs tag
Mussagl	1.0.0	Nov. 1st, 2006	​GPL v2	Available later today	​Win32 Installer	​Source (.tar.gz)	darcs	mussa_1.0.0

Contact

If you would like to contact us about Mussagl, feel free to e-mail one or both of us:

• Diane Trout <diane (at) caltech.edu>
• Brandon King <kingb (at) caltech.edu>

Documentation

• ​Mussagl User Guide
• Mussagl Video Tutorials - Work in Progress
• Example Data
• Developement Roadmap

• Checking out Mussagl from Revision Control
• Recent Mussagl Changes in Revision Control
• Building Mussagl from Source

• PerformanceNotes

Feature Requests / Bugs

• Submit a new feature request/bug ticket
• View existing tickets

Older Mussa Versions

• Mussa - C++/FLTK Version
• Mussa Prototype (Retired) - Python/PMW Version

Development Credits

• Mussagl: Diane Trout with assitance from Brandon King (Core algorithms retained from Mussa (C++/FLTK) )
• C++/FLTK conversion: Tristan De Buysscher with assistance from ​Titus Brown
• Python/PMW prototype: ​Tristan De Buysscher & Nora Mullaney
• Consulting User: ​Erich Schwarz
• Principal Investigators: ​Barbara Wold, ​Paul Sternberg

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