| #81 | 
        
          Storing and searching metadata
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          blocker
         | 
        
          from __future__ import magic
         | 
      
      
        | #77 | 
        
          Font needs to be better...
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          critical
         | 
        
          Standing on our heads
         | 
      
      
        | #82 | 
        
          Unit test python API
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          critical
         | 
        
          unit tests
         | 
      
      
        | #98 | 
        
          QtAssistant needs to be put in the right place on os x.
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          critical
         | 
        
          Standing on our heads
         | 
      
      
        | #100 | 
        
          There should be some way to display the annotation name with the annotation track
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          critical
         | 
        
          Standing on our heads
         | 
      
      
        | #108 | 
        
          Cancel on the progress bar should do something
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          critical
         | 
        
          Standing on our heads
         | 
      
      
        | #249 | 
        
          darcs tag mussa_1.1.0
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          critical
         | 
        
          release_1.1
         | 
      
      
        | #263 | 
        
          Compile warnings must die!
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          critical
         | 
        
          release_1.1
         | 
      
      
        | #9 | 
        
          Connect to cartwheel
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #13 | 
        
          AnnotationColor mapper needs a user interface
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #17 | 
        
          Allow user to specify an offset for base pair location label
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #28 | 
        
          Allow user to force a loaded sequence to be reverse complimented.
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #61 | 
        
          For mac users it'd be useful to make double clicking on a data file actually load mussagl
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #65 | 
        
          It'd be neat if you could select a region and go to ucsc
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #80 | 
        
          Difference between analyses
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #87 | 
        
          Autodetect threshold
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #141 | 
        
          Vector output
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #198 | 
        
          Document the multi add to sub-analysis feature.
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          major
         | 
        
          document_1.1
         | 
      
      
        | #202 | 
        
          Investigate SIP instead of boost::python
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #204 | 
        
          When you resize a mussa window, resize the drawing too.
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #205 | 
        
          Add button for autofitting sequence to window
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          release_1.2
         | 
      
      
        | #209 | 
        
          Extend the command line parsing to allow fully specifying an analysis
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #218 | 
        
          Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          release_1.2
         | 
      
      
        | #219 | 
        
          Reordering sequences in an analysis would be really nice
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #222 | 
        
          Allow hyperlink annotations for CDS to PyMol rendering of protein structure
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #224 | 
        
          Define a common base class between MussaWindow and MussAlignedWindow
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          Standing on our heads
         | 
      
      
        | #228 | 
        
          Allow more vertical collapse of description widgets
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          release_1.2
         | 
      
      
        | #232 | 
        
          Document the report bp copied number.
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          major
         | 
        
          document_1.1
         | 
      
      
        | #234 | 
        
          Document * in title when there are unsaved changes
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          major
         | 
        
          document_1.1
         | 
      
      
        | #238 | 
        
          Set left offset graphically
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          from __future__ import magic
         | 
      
      
        | #241 | 
        
          One of the annotations needed is to show where the start of the gene is
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          major
         | 
        
          release_1.2
         | 
      
      
        | #242 | 
        
          make really sure people understand how repeatmasking prevents motifs from being shown.
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          major
         | 
        
          document_1.1
         | 
      
      
        | #248 | 
        
          Test latest build on all platforms
         | 
        
          new
         | 
        
          diane
         | 
        
          task
         | 
        
          major
         | 
        
          release_1.1
         | 
      
      
        | #258 | 
        
          document new escape to clear selection
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          major
         | 
        
          document_1.1
         | 
      
      
        | #266 | 
        
          Sub-analysis drawing bug (see attached screenshots)
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          major
         | 
        
          release_1.1
         | 
      
      
        | #267 | 
        
          Sequence View soft threshold control non-responsive
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          major
         | 
        
          release_1.1
         | 
      
      
        | #268 | 
        
          files that lack a new line would make the mupa parser choke
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          major
         | 
        
          
         | 
      
      
        | #54 | 
        
          Allow compressing repeat regions
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          minor
         | 
        
          from __future__ import magic
         | 
      
      
        | #112 | 
        
          Sequence logo
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          minor
         | 
        
          from __future__ import magic
         | 
      
      
        | #123 | 
        
          Allow hiding sidebars
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          minor
         | 
        
          release_1.2
         | 
      
      
        | #136 | 
        
          allow absolute positioning
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          minor
         | 
        
          Standing on our heads
         | 
      
      
        | #231 | 
        
          Document copy and paste into motif editor now functional.
         | 
        
          new
         | 
        
          king
         | 
        
          task
         | 
        
          minor
         | 
        
          document_1.1
         | 
      
      
        | #253 | 
        
          Show conserved window on local alignment display
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          minor
         | 
        
          Standing on our heads
         | 
      
      
        | #262 | 
        
          ThresholdWidget.reset() SIGNAL/SLOTS issue.
         | 
        
          new
         | 
        
          diane
         | 
        
          defect
         | 
        
          minor
         | 
        
          release_1.2
         | 
      
      
        | #193 | 
        
          Changing a species name doesn't set dirty flag.
         | 
        
          new
         | 
        
          diane
         | 
        
          enhancement
         | 
        
          trivial
         | 
        
          release_1.2
         |