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Ticket Resolution Summary Owner Reporter
#153 fixed Allow users to specify the file load file mask king diane
Description

Currently its somewhat mysterious what file masks we allow for mussa parameter and motif list files, we either need to remove the file mask, make it more obvious what they are, or let the user specify a the mask.

At least the file mask being used should be documented in the manual.

#1 fixed Annotation color mapper diane diane
Description

We need some way of tracking the colors an annotation (and motifs) should have, the user should also be able to change a color and set its priority.

#71 worksforme AnnotationColors don't always color motifs correctly diane diane
Description

I would show that on the sequence alignment view, some highlighted motifs show in the color selected, while in other genomes, htey show up as black (and black out the nucleotides so they cannot be read

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