Opened 18 years ago
Closed 18 years ago
#144 closed defect (fixed)
IUPAC codes are destroyed by the sequence normalization code
| Reported by: | diane | Owned by: | diane |
|---|---|---|---|
| Priority: | critical | Milestone: | Few Small Repairs |
| Component: | Qt Gui | Version: | |
| Keywords: | Cc: |
Description
when searching for a motif the sequence class feeds things through a normalization step which replaces the non IUPAC values with Ns
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[398] added general sequence alphabet handling. (Using a subset of corebio.seq alphabet names)
With that when we create a motif as a sequence the IUPAC letters don't get munged to N.