Opened 16 years ago
Closed 16 years ago
#144 closed defect (fixed)
IUPAC codes are destroyed by the sequence normalization code
|Reported by:||diane||Owned by:||diane|
|Priority:||critical||Milestone:||Few Small Repairs|
when searching for a motif the sequence class feeds things through a normalization step which replaces the non IUPAC values with Ns
Change History (1)
comment:1 by , 16 years ago
|Status:||new → closed|
Note: See TracTickets for help on using tickets.
 added general sequence alphabet handling. (Using a subset of corebio.seq alphabet names)
With that when we create a motif as a sequence the IUPAC letters don't get munged to N.