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Ticket Summary Status Type Priority Milestone Component
#89 Blast to find mussa regions new enhancement trivial Standing on our heads core
#193 Changing a species name doesn't set dirty flag. new enhancement trivial release_1.2 Qt Gui
#11 create unifed sequence type new enhancement minor Standing on our heads core
#18 segments should indicate if they're both forward and reveresed new enhancement minor from __future__ import magic core
#29 Connect to Core Match new enhancement minor Standing on our heads core
#48 Automate win32 installer build new enhancement minor other
#54 Allow compressing repeat regions new enhancement minor from __future__ import magic Qt Gui
#112 Sequence logo new enhancement minor from __future__ import magic Qt Gui
#123 Allow hiding sidebars new enhancement minor release_1.2 Qt Gui
#124 report patch version new enhancement minor release_1.2 core
#136 allow absolute positioning new enhancement minor Standing on our heads Qt Gui
#155 Include a simple repeat filter new enhancement minor from __future__ import magic core
#230 shipit script should ship source distribution too. new enhancement minor release_1.2 other
#253 Show conserved window on local alignment display new enhancement minor Standing on our heads Qt Gui
#262 ThresholdWidget.reset() SIGNAL/SLOTS issue. new defect minor release_1.2 Qt Gui
#6 Analysis saving is smelly new task major Standing on our heads core
#7 Reuse seqcomps new enhancement major Standing on our heads core
#8 Per species thresholds new enhancement major from __future__ import magic core
#9 Connect to cartwheel new enhancement major Standing on our heads Qt Gui
#13 AnnotationColor mapper needs a user interface new enhancement major Standing on our heads Qt Gui
#17 Allow user to specify an offset for base pair location label new enhancement major Standing on our heads Qt Gui
#21 Implement a better way of handling the GL selection buffer new task major Standing on our heads core
#28 Allow user to force a loaded sequence to be reverse complimented. new enhancement major from __future__ import magic Qt Gui
#61 For mac users it'd be useful to make double clicking on a data file actually load mussagl new enhancement major Standing on our heads Qt Gui
#65 It'd be neat if you could select a region and go to ucsc new enhancement major Standing on our heads Qt Gui
#80 Difference between analyses new enhancement major from __future__ import magic Qt Gui
#87 Autodetect threshold new enhancement major from __future__ import magic Qt Gui
#88 Find titus' paper on FR versus the bacterial genomes assigned task major other
#106 Figure out how to test copySelectedTracks new enhancement major unit tests core
#141 Vector output new enhancement major Standing on our heads Qt Gui
#145 Use titus' paircomp and motility new enhancement major Standing on our heads core
#201 Run analyses in worker thread new enhancement major Standing on our heads core
#203 Unit test the code that generates all the mussa filename new enhancement major unit tests core
#204 When you resize a mussa window, resize the drawing too. new enhancement major Standing on our heads Qt Gui
#205 Add button for autofitting sequence to window new enhancement major release_1.2 Qt Gui
#209 Extend the command line parsing to allow fully specifying an analysis new enhancement major Standing on our heads Qt Gui
#218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog new enhancement major release_1.2 Qt Gui
#219 Reordering sequences in an analysis would be really nice new enhancement major from __future__ import magic Qt Gui
#222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure new enhancement major from __future__ import magic Qt Gui
#224 Define a common base class between MussaWindow and MussAlignedWindow new enhancement major Standing on our heads Qt Gui
#228 Allow more vertical collapse of description widgets new enhancement major release_1.2 Qt Gui
#238 Set left offset graphically new enhancement major from __future__ import magic Qt Gui
#241 One of the annotations needed is to show where the start of the gene is new enhancement major release_1.2 Qt Gui
#242 make really sure people understand how repeatmasking prevents motifs from being shown. new defect major document_1.1 Qt Gui
#245 Implement back_inserter for sequence type new enhancement major from __future__ import magic core
#248 Test latest build on all platforms new task major release_1.1 Qt Gui
#266 Sub-analysis drawing bug (see attached screenshots) new defect major release_1.1 Qt Gui
#267 Sequence View soft threshold control non-responsive new defect major release_1.1 Qt Gui
#268 files that lack a new line would make the mupa parser choke new defect major Qt Gui
#77 Font needs to be better... new enhancement critical Standing on our heads Qt Gui
#82 Unit test python API new enhancement critical unit tests Qt Gui
#98 QtAssistant needs to be put in the right place on os x. new enhancement critical Standing on our heads Qt Gui
#100 There should be some way to display the annotation name with the annotation track new enhancement critical Standing on our heads Qt Gui
#108 Cancel on the progress bar should do something new enhancement critical Standing on our heads Qt Gui
#220 mussa command line seems to be broken... new defect critical core
#249 darcs tag mussa_1.1.0 new defect critical release_1.1 Qt Gui
#263 Compile warnings must die! new defect critical release_1.1 Qt Gui
#30 Allow "leave one out" nway transitive searches new enhancement blocker release_1.2 core
#81 Storing and searching metadata new enhancement blocker from __future__ import magic Qt Gui
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