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Ticket Summary Owner Type Priority Milestone Component
#89 Blast to find mussa regions diane enhancement trivial Standing on our heads core
#193 Changing a species name doesn't set dirty flag. diane enhancement trivial release_1.2 Qt Gui
#11 create unifed sequence type diane enhancement minor Standing on our heads core
#18 segments should indicate if they're both forward and reveresed diane enhancement minor from __future__ import magic core
#29 Connect to Core Match diane enhancement minor Standing on our heads core
#48 Automate win32 installer build diane enhancement minor other
#54 Allow compressing repeat regions diane enhancement minor from __future__ import magic Qt Gui
#112 Sequence logo diane enhancement minor from __future__ import magic Qt Gui
#123 Allow hiding sidebars diane enhancement minor release_1.2 Qt Gui
#124 report patch version diane enhancement minor release_1.2 core
#136 allow absolute positioning diane enhancement minor Standing on our heads Qt Gui
#155 Include a simple repeat filter diane enhancement minor from __future__ import magic core
#159 Create track macro to display changelog with build numbers king task minor from __future__ import docs other
#165 Include a section on creating a motif list file using the smn1 data. king task minor from __future__ import docs other
#230 shipit script should ship source distribution too. diane enhancement minor release_1.2 other
#231 Document copy and paste into motif editor now functional. king task minor document_1.1 Qt Gui
#253 Show conserved window on local alignment display diane enhancement minor Standing on our heads Qt Gui
#262 ThresholdWidget.reset() SIGNAL/SLOTS issue. diane defect minor release_1.2 Qt Gui
#6 Analysis saving is smelly diane task major Standing on our heads core
#7 Reuse seqcomps diane enhancement major Standing on our heads core
#8 Per species thresholds diane enhancement major from __future__ import magic core
#9 Connect to cartwheel diane enhancement major Standing on our heads Qt Gui
#13 AnnotationColor mapper needs a user interface diane enhancement major Standing on our heads Qt Gui
#17 Allow user to specify an offset for base pair location label diane enhancement major Standing on our heads Qt Gui
#21 Implement a better way of handling the GL selection buffer diane task major Standing on our heads core
#28 Allow user to force a loaded sequence to be reverse complimented. diane enhancement major from __future__ import magic Qt Gui
#61 For mac users it'd be useful to make double clicking on a data file actually load mussagl diane enhancement major Standing on our heads Qt Gui
#65 It'd be neat if you could select a region and go to ucsc diane enhancement major Standing on our heads Qt Gui
#80 Difference between analyses diane enhancement major from __future__ import magic Qt Gui
#87 Autodetect threshold diane enhancement major from __future__ import magic Qt Gui
#106 Figure out how to test copySelectedTracks diane enhancement major unit tests core
#141 Vector output diane enhancement major Standing on our heads Qt Gui
#145 Use titus' paircomp and motility diane enhancement major Standing on our heads core
#198 Document the multi add to sub-analysis feature. king task major document_1.1 Qt Gui
#201 Run analyses in worker thread diane enhancement major Standing on our heads core
#202 Investigate SIP instead of boost::python king task major Standing on our heads Qt Gui
#203 Unit test the code that generates all the mussa filename diane enhancement major unit tests core
#204 When you resize a mussa window, resize the drawing too. diane enhancement major Standing on our heads Qt Gui
#205 Add button for autofitting sequence to window diane enhancement major release_1.2 Qt Gui
#209 Extend the command line parsing to allow fully specifying an analysis diane enhancement major Standing on our heads Qt Gui
#218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog diane enhancement major release_1.2 Qt Gui
#219 Reordering sequences in an analysis would be really nice diane enhancement major from __future__ import magic Qt Gui
#221 Discover/document effect of ordering species on analysis run times. king task major document_1.1 core
#222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure diane enhancement major from __future__ import magic Qt Gui
#224 Define a common base class between MussaWindow and MussAlignedWindow diane enhancement major Standing on our heads Qt Gui
#228 Allow more vertical collapse of description widgets diane enhancement major release_1.2 Qt Gui
#232 Document the report bp copied number. king task major document_1.1 Qt Gui
#234 Document * in title when there are unsaved changes king task major document_1.1 Qt Gui
#238 Set left offset graphically diane enhancement major from __future__ import magic Qt Gui
#241 One of the annotations needed is to show where the start of the gene is diane enhancement major release_1.2 Qt Gui
#242 make really sure people understand how repeatmasking prevents motifs from being shown. diane defect major document_1.1 Qt Gui
#245 Implement back_inserter for sequence type diane enhancement major from __future__ import magic core
#248 Test latest build on all platforms diane task major release_1.1 Qt Gui
#258 document new escape to clear selection king task major document_1.1 Qt Gui
#264 Document sequence properties king task major document_1.1 other
#266 Sub-analysis drawing bug (see attached screenshots) diane defect major release_1.1 Qt Gui
#267 Sequence View soft threshold control non-responsive diane defect major release_1.1 Qt Gui
#268 files that lack a new line would make the mupa parser choke diane defect major Qt Gui
#77 Font needs to be better... diane enhancement critical Standing on our heads Qt Gui
#82 Unit test python API diane enhancement critical unit tests Qt Gui
#98 QtAssistant needs to be put in the right place on os x. diane enhancement critical Standing on our heads Qt Gui
#100 There should be some way to display the annotation name with the annotation track diane enhancement critical Standing on our heads Qt Gui
#108 Cancel on the progress bar should do something diane enhancement critical Standing on our heads Qt Gui
#220 mussa command line seems to be broken... diane defect critical core
#249 darcs tag mussa_1.1.0 diane defect critical release_1.1 Qt Gui
#263 Compile warnings must die! diane defect critical release_1.1 Qt Gui
#30 Allow "leave one out" nway transitive searches diane enhancement blocker release_1.2 core
#81 Storing and searching metadata diane enhancement blocker from __future__ import magic Qt Gui
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