Opened 18 years ago

Closed 18 years ago

#10 closed defect (duplicate)

Integrate motifs with annotations

Reported by: diane Owned by: diane
Priority: major Milestone: Standing on our heads
Component: core Version:
Keywords: Cc:


The old code treated motifis and annotations differently. I think motif searching should generate annotations, which can then use the AnnotationColors color mapper to define what the color for that motif should be.

One might argue that there are usually many more motifs found for a sequence and that'll be too much of a slow down, but I suspect its not going to be a big issue, and the unification of the code paths (and user interface for modifying colors) will be a big win.

Change History (4)

comment:1 by diane, 18 years ago

Milestone: Bionic MussaFew Small Repairs

comment:2 by diane, 18 years ago

Milestone: Few Small RepairsStanding on our heads
Type: taskenhancement

comment:3 by diane, 18 years ago

Type: defect
Version: 2.0

comment:4 by diane, 18 years ago

Resolution: duplicate
Status: newclosed

The move to turn motifs and annotations into specializations of sequence would achieve this this. So I'm going to rule this is now covered by ticket:11

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