Opened 18 years ago

Closed 18 years ago

Last modified 18 years ago

#4 closed (fixed)

Aligned sequence view

Reported by: diane Owned by: diane
Priority: critical Milestone: Bionic Mussa
Component: Qt Gui Version:
Keywords: Cc:

Description (last modified by diane)

In addition to the view showing the connections between different seqcomp windows, we also need to show the per base alignment. But [117] is progress.

Change History (6)

comment:1 by diane, 18 years ago

Status: newassigned
Type: defecttask

comment:2 by diane, 18 years ago

Priority: majorcritical
Status: assignednew

comment:3 by diane, 18 years ago

Status: newassigned

comment:4 by diane, 18 years ago

Falling asleep. GlSeqBrowser::centerOnPath needs to understand where the X position of a sequence should be when its negative. (either by understanding the reversing or alternatively switching to a flag for indicating reverse compliment.

Other problem is zoom is too weird for trying to tell the browser to just view a small region.

Should these be tickets?

comment:5 by diane, 18 years ago

Description: modified (diff)

I wonder why the path computation sometimes puts the sequence in some random place way off in the middle of nowhere.

Not to mention I still need some way of choosing & viewing an alignment.

comment:6 by diane, 18 years ago

Resolution: fixed
Status: assignedclosed

[119] seems to at least basically work.

I think the reverse compliment color doesn't seem right and I'm not so sure that all the alignments are going to the right places. But it renders.

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