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Ticket Summary Owner Type Priority Milestone Component
#180 shipit script on os x needs to validate the archive diane defect major release_1.0 other
#181 Update 'Load a mussa parameter file' section king task major document_1.0 other
#183 Seqcomp is case sensitive diane defect major release_1.0 core
#184 Dont link against X11 on OS X diane defect major release_1.0 other
#185 Update "Load an analysis" section (text/screenshots) king task major document_1.0 other
#189 Document "save on close" section after close of ticket:187 king task major document_1.0 other
#191 Update "Motif Dialog" section king enhancement major document_1.0 other
#192 Steven can't save with mussa diane defect major release_1.0 Qt Gui
#196 Motif editor: document how to delete a motif king enhancement major document_1.0 other
#197 the subanalysis when using the original mck example draws lines off the sequence. diane defect major release_1.0 Qt Gui
#199 After [451] I noticed that subanalyses didn't seem to have motif information diane defect major release_1.0 Qt Gui
#200 Pushing the threshold change button too fast will cause mussa to crash diane defect major release_1.0 Qt Gui
#207 Reenable GUI tests diane defect major unit tests Qt Gui
#208 the alg unittest executable needs to be broken up diane enhancement major unit tests core
#211 Report how many basepairs are copied diane enhancement major release_1.1 Qt Gui
#216 subanalysis doesn't call setSoftThreshold to after finishing analysis diane defect major release_1.0 Qt Gui
#217 Use QtDesktopServices for openURL diane enhancement major release_1.1 Qt Gui
#226 QtTest is now a framework diane defect major release_1.1 other
#227 Document Python useage in Mussagl king task major document_1.0 Qt Gui
#229 Package Everything for 1.0 diane task major release_1.0 other
#233 when first displaying mussa the tracks aren't sized to the available viewport on os x diane defect major release_1.1 Qt Gui
#235 set version to 1.0 in version.h diane task major release_1.0 other
#236 Error parsing annotation file should also include the filename in the exception. diane enhancement major release_1.1 core
#237 Crashing with invalid file name diane defect major release_1.1 Qt Gui
#239 Report error when trying to load a directory as an annotation. diane defect major release_1.1 core
#243 Change mussa track to white boxes with Ns highlighted in black diane enhancement major release_1.2 Qt Gui
#244 len(mussa.paths()) returns number of tracks, not the number of paths found diane defect major release_1.1 python interface
#246 Add "What's this?" documentation to as many elements of the GUI as possible. king enhancement major release_1.1 Qt Gui
#251 Save to image crash king defect major release_1.1 Qt Gui
#252 Make scroll wheel work king enhancement major release_1.1 Qt Gui
#255 Even telling cmake to use python2.3 mussa still builds against 2.5 diane defect major release_1.1 python interface
#256 Assertion failed diane defect major release_1.1 Qt Gui
#257 Saving analysis saves at current threshold king defect major release_1.1 Qt Gui
#260 Mupa parser is cranky on windows files diane defect major release_1.1 core
#265 Mussa annotation file didn't work if the last sequence wasn't terminated by a newline diane defect major release_1.1 core
#20 Toggle Motif Button Implementation king defect minor Few Small Repairs Qt Gui
#24 Clean up the signals and slots diane defect minor Few Small Repairs Qt Gui
#27 Collect example sequences diane enhancement minor other
#34 Unused variable 'max_range' in 'void ScrollableSequenceBrowser::updateScrollBar()' diane defect minor Few Small Repairs Qt Gui
#35 Zoom Icon diane minor Few Small Repairs Qt Gui
#40 MussaAlignedWindow, left sequence position doesn't get initial value set diane minor Bionic Mussa Qt Gui
#41 Selection box jumps slightly to the right of the rubber band diane task minor Bionic Mussa Qt Gui
#42 when resizing you should see more basepairs, not make them bigger. diane defect minor Bionic Mussa Qt Gui
#43 After scrolling a sequence browser window, selection boxes break diane defect minor Few Small Repairs Qt Gui
#46 link in icons diane defect minor Few Small Repairs Qt Gui
#50 Switch to using Qt4.1 resources (automatically compiles resources into binary). diane defect minor Few Small Repairs Qt Gui
#52 Saved analysis needs to keep widow size and threshold for threshold widget diane defect minor Few Small Repairs Qt Gui
#56 Define analysis should include scroll area when SequenceWidget count >= 3 king defect minor Few Small Repairs Qt Gui
#64 Occasionally ConservedPath crashes diane minor Few Small Repairs Qt Gui
#95 Annotations masked out when motif defined and then undefined. diane defect minor Few Small Repairs Qt Gui
#96 Save to image broken king defect minor Few Small Repairs Qt Gui
#97 Help > Mussa Manual... should have warning dialog upon error king defect minor Few Small Repairs Qt Gui
#103 Motifs need a name field diane enhancement minor Few Small Repairs Qt Gui
#105 Load Analysis should spawn a new window diane defect minor Standing on our heads Qt Gui
#115 The create an analysis screen create the sequences in the reverse order. diane defect minor Few Small Repairs Qt Gui
#148 setup_analysis dialog should make sure that the threshold is not greater than the window size. diane defect minor Few Small Repairs Qt Gui
#152 Update mussa_manual.adp to latest tutorial version king task minor document_1.0 other
#162 Mussa manual: Update major new features section king task minor document_1.0 other
#173 Update "Sequence Information Bar" section, as it has changed in latest version. king enhancement minor document_1.0 other
#177 Confirm description of blue conservation tracks is correct. diane task minor document_1.0 other
#186 Motif dialog on load existing motifs behavior needs update. diane enhancement minor release_1.0 Qt Gui
#187 Editing a motif does not set dirty flag. diane defect minor release_1.0 Qt Gui
#188 Save motifs action does not append .mtl or .txt by default diane enhancement minor release_1.0 Qt Gui
#190 Update 'save motifs' section after close of ticket #188. king task minor document_1.0 other
#213 Document how to deselect tracks/paths king task minor document_1.0 Qt Gui
#214 Document why sub-analysis exists king enhancement minor document_1.0 other
#225 Document mussagl command line option king task minor document_1.0 Qt Gui
#240 When there are no matches, mussa doesn't seem to display anything king defect minor release_1.1 Qt Gui
#254 Sub-analysis failing to draw paths on init king defect minor release_1.1 Qt Gui
#261 Mussa mupa comment character required a space diane defect minor release_1.1 core
#22 default size hint broken diane defect trivial Few Small Repairs Qt Gui
#53 Copy an example into the os x dmg diane trivial Few Small Repairs other
#60 sequence alignment view needs zoom diane defect trivial Few Small Repairs core
#74 On OSX when maxmizing the sidebar stays on the GL canvas diane defect trivial Few Small Repairs Qt Gui
#84 The analysis title should report what file you loaded diane trivial Standing on our heads Qt Gui
#128 the editable sequence name only shows the end of long names. diane defect trivial Few Small Repairs Qt Gui
#137 Document why Base pair match lines on the sequence view don't always connect all the sequences diane task trivial document_1.0 other
#147 Sometimes the width of a quadrallateral is too small diane defect trivial Few Small Repairs Qt Gui
#149 Handle " in motif names diane defect trivial Few Small Repairs Qt Gui
#153 Allow users to specify the file load file mask king task trivial document_1.0 Qt Gui
#194 use window feedback to show that there are unsaved changes diane enhancement trivial release_1.1 Qt Gui
#212 ESC key should by bound to 'deselect' current selection. diane enhancement trivial release_1.2 Qt Gui
#223 Set the Window Icon to be the Mussa icon king enhancement trivial release_1.0 Qt Gui
#37 Skateboard Shoes diane defect
#47 OS X OpenGL rendering problems diane defect
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