Timeline
04/13/2006:
- 13:02 Ticket #83 (Mussa should complain about misformatted fasta files instead of crashing.) closed by
- fixed: [180] fixes this
04/12/2006:
- 16:29 Ticket #64 (Occasionally ConservedPath crashes) closed by
- fixed: I'm going to optimistcally assume that ticket:89 was a reliable way to …
- 16:28 Ticket #85 (mussagl quits, just like i will AGAIN soon.) closed by
- fixed: [178] fixes this.
- 13:14 Ticket #90 (the arrow keys aren't connected to the scrollbar) created by
- a small detail first. the arrows (left-right) on the bottom of the …
04/11/2006:
- 18:01 Ticket #15 (Unify build system) closed by
- fixed
- 15:55 Ticket #89 (Blast to find mussa regions) created by
- its unclear if this is a good idea or not, but it might be …
- 14:03 Ticket #88 (Find titus' paper on FR versus the bacterial genomes) created by
- They had some conclusion about different models of evolution for the …
- 13:54 Ticket #87 (Autodetect threshold) created by
- It might be useful to autodetect a reasonable threshold…
- 11:21 Ticket #86 (Progresss bar) created by
- Some tasks take a long time to run, so we really should give some hint …
- 11:12 Ticket #85 (mussagl quits, just like i will AGAIN soon.) created by
- once the three way screen shot is active, if i try to click on the up …
- 00:47 Ticket #84 (The analysis title should report what file you loaded) created by
04/10/2006:
04/09/2006:
- 14:32 Ticket #83 (Mussa should complain about misformatted fasta files instead of crashing.) created by
- i entered 3 sequences using the browser function. two sequences were …
04/07/2006:
- 00:40 Ticket #82 (Unit test python API) created by
- With the new cmake system I should make sure that I also test my boost …
04/06/2006:
- 12:06 Ticket #81 (Storing and searching metadata) created by
- It'd be really really nice if there was some way that a person could …
04/04/2006:
- 00:53 Ticket #74 (On OSX when maxmizing the sidebar stays on the GL canvas) closed by
- fixed: [162] changed from using QSplitter to just a QHBoxLayout (with sizing …
03/30/2006:
- 15:50 Ticket #80 (Difference between analyses) created by
- It would be useful if you could load an analysis and then load a …
- 14:59 Ticket #68 (The web site should have the Caltech and possibly BMNC logo) closed by
- fixed: Changed to Caltech Logo.
- 11:48 Ticket #79 (It'd be nice if you could annotate by providing fasta files) created by
- Family relations does it... why cant mussa.
03/29/2006:
- 22:59 Ticket #78 (Reverse compliment alignment lines dont seem to match up) created by
- As far as I can tell the lines connecting reverse compliments on the …
- 15:14 Ticket #77 (Font needs to be better...) created by
- Its hard to read…
- 14:57 Ticket #76 (Qt 4.1.1 crashes on barbara's computer) created by
- when going to the alignment view, when built on ali's computer it …
- 14:56 Ticket #75 (The scrollbar navigation when zoomed in jumps too far) created by
- When you navigate by dragging the thumb around on the sequence view …
- 14:26 Ticket #74 (On OSX when maxmizing the sidebar stays on the GL canvas) created by
- 13:24 MussaglBuild edited by
- Comment about versions of Qt4.1 (diff)
- 13:23 MussaglBuild edited by
- (diff)
- 00:26 Ticket #69 (motifs may not be rendering corectly) closed by
- fixed: [155] makes this bearable.
- 00:25 Ticket #71 (AnnotationColors don't always color motifs correctly) reopened by
03/28/2006:
- 23:18 Ticket #71 (AnnotationColors don't always color motifs correctly) closed by
- duplicate: ticket:69 is very closely related.
- 22:55 Ticket #63 (with two sequences the align sequence view doesn't show any connections) closed by
- fixed: Fixed by [154]
- 21:46 Ticket #66 (The annotation for myogenin needs to be checked.) closed by
- fixed: I grabbed annotation for human and mouse from ucsc by clicking on the …
- 21:41 Ticket #60 (sequence alignment view needs zoom) closed by
- fixed
- 18:03 WikiStart edited by
- (diff)
03/27/2006:
- 22:36 Ticket #34 (Unused variable 'max_range' in 'void ...) closed by
- fixed: Fixed in [110] (Someone needs to check my OCD, why did I go hunt that …
- 22:14 Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) closed by
- fixed: ticket:46 was a duplicate
- 22:14 Ticket #46 (link in icons) closed by
- fixed: ticket:50 is duplicate idea specifying an implementation for this. …
- 21:59 Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) closed by
- fixed: Dupe of ticket:55 this is effectively the same ticket as ticket:52, …
- 17:46 Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) closed by
- fixed
- 17:46 Ticket #31 (Threshold Widget should use spinboxes) closed by
- fixed
- 13:05 Ticket #73 (Performance problems doing analysis) created by
- Steven noticed that doing an analysis seemed far slower than with …
- 13:03 Ticket #72 (Myogenin human mouse rat cow chicken files are odd) created by
- In no case was I able to see the feature I had highlighted shown in …
- 13:01 Ticket #71 (AnnotationColors don't always color motifs correctly) created by
- I would show that on the sequence alignment view, some highlighted …
- 12:56 Ticket #70 (Need to be able to save screenshots in View Alignment Page) created by
- 1. when in view alignment screen, and you go to services to grab the …
03/24/2006:
- 18:27 Ticket #69 (motifs may not be rendering corectly) created by
- Especially when moving around the sequence the motifs flash in and …
- 18:17 Ticket #68 (The web site should have the Caltech and possibly BMNC logo) created by
- We should look more professional, and use boring logos
- 18:14 Ticket #67 (You should be able to open multiple analyses) created by
- There should be a way to create multiple MussaAnalysis windows.
- 18:12 Ticket #57 (Define analysis is annoying) closed by
- fixed
- 18:10 Ticket #53 (Copy an example into the os x dmg) closed by
- fixed
- 18:09 Ticket #66 (The annotation for myogenin needs to be checked.) created by
- Also the color could be brighter.
- 18:07 Ticket #65 (It'd be neat if you could select a region and go to ucsc) created by
- This is also useful for fixing annotation problems
- 17:53 Ticket #64 (Occasionally ConservedPath crashes) created by
- don't have good examples to trigger it but I've seen it happen twice
- 17:41 Ticket #63 (with two sequences the align sequence view doesn't show any connections) created by
- I wonder if the alignment view needs at least 3 sequences to render?
- 17:32 Ticket #62 (Aligning sequence that has a reverse compliment doesn't fully align ...) created by
- I suspect the because the reverse compliment is based from the right …
- 17:30 Ticket #61 (For mac users it'd be useful to make double clicking on a data file ...) created by
- Of course somehow we'd need to make an analysis actually be …
- 17:29 Ticket #60 (sequence alignment view needs zoom) created by
- It'd be useful to zoom out a bit from the sequence aligned view to …
- 17:27 Ticket #59 (the washed out sequence should actually be partially transparent.) created by
- It's possible for the selected sequence to be completely hidden, so …
- 16:59 Ticket #58 (why does mussa take so long to recompute a large nway?) created by
- you can load an nway and it'll show up correctly? but if you set back …
03/23/2006:
- 11:55 WikiStart edited by
- (diff)
- 11:53 WikiStart edited by
- (diff)
- 11:52 WikiStart edited by
- (diff)
- 11:03 Ticket #57 (Define analysis is annoying) created by
- When something goes wrong with the define analysis, it catches the …
- 11:02 Ticket #56 (Define analysis should include scroll area when SequenceWidget count >= 3) created by
- Define analysis should include scroll area when SequenceWidget count …
- 10:54 Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) created by
- I need some way of knowing when what the threshold and window sizes …
- 10:24 Ticket #54 (Allow compressing repeat regions) created by
- For MEME Ali compressed reprat regions and replaced them with a small …
03/22/2006:
- 18:13 Ticket #53 (Copy an example into the os x dmg) created by
- It'd be useful to include one of the sequence examples when shipping …
- 16:52 Ticket #39 (sidebar rendering problems) closed by
- fixed: [138] should fix this.
- 16:13 Ticket #41 (Selection box jumps slightly to the right of the rubber band) closed by
- fixed: Fixed by [137] and this was caused by the same problem as ticket:43
- 16:11 Ticket #43 (After scrolling a sequence browser window, selection boxes break) closed by
- fixed
- 15:28 Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) created by
- The Mussa class when reloaded from an analysis needs to keep track of …
- 14:22 Ticket #51 (Copying sequence might be useful) created by
- It'd be nice to be able to copy sequence from a sequence track.
- 14:19 Ticket #47 (OS X OpenGL rendering problems) closed by
- fixed: Increasing the line thicknesses in [134] actually worked
- 13:51 Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) created by
- Switch to using Qt4.1 resources (automatically compiles resources into …
- 01:50 Ticket #49 (QAssistant Mussa Docs) created by
- A tutorial and/or user manual should be made and included within …
- 01:47 Ticket #48 (Automate win32 installer build) created by
- Wouldn't it be nice if a new build of the win32 installer could be me …
03/21/2006:
- 22:11 WikiStart edited by
- Got Win32 Installer? (diff)
- 21:12 Milestone Bionic Mussa completed
- Duplicate the core functionality of Tristan's FLTK mussa.
- 20:55 Ticket #5 (Configure a mussa analysis from the Gui) closed by
- fixed: Implementation finished in [135] however it revealed a bug on os x …
- 16:46 Ticket #47 (OS X OpenGL rendering problems) created by
- The line widths in the opengl canvas on os x are badly pixelated on …
- 16:44 Ticket #45 (recreate os x bless script) closed by
- fixed: Added in [131]
- 15:03 MussaglBuild edited by
- (diff)
- 12:22 Ticket #46 (link in icons) created by
- OS X can't find the menu icons. It would be best if they were linked …
- 01:28 Ticket #45 (recreate os x bless script) created by
- Need to recreate the qt-mac bless script so I can actually …
- 01:23 darcs edited by
- (diff)
- 00:49 Ticket #14 (Motifs need to be creatable and editable from within the GUI) closed by
- fixed
03/20/2006:
- 17:35 Ticket #44 (Computation of reverse compliment colors is buggy) created by
- For both types of links (mussa windows and base pair alignments) the …
- 17:23 Ticket #37 (Skateboard Shoes) closed by
- fixed: Computations involving ceil hurt my head... I had ceil(left) - seq_x …
- 16:08 Ticket #42 (when resizing you should see more basepairs, not make them bigger.) closed by
- fixed
- 16:07 Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) closed by
- fixed
- 16:02 Ticket #37 (Skateboard Shoes) reopened by
- 15:19 Ticket #37 (Skateboard Shoes) closed by
- fixed: it magically went away.
- 14:13 Ticket #43 (After scrolling a sequence browser window, selection boxes break) created by
- The selection box doesn't work correctly when you've scrolled the …
- 13:55 Ticket #42 (when resizing you should see more basepairs, not make them bigger.) created by
- When resizing the window instead of "zooming" you should see more base …
- 13:48 Ticket #41 (Selection box jumps slightly to the right of the rubber band) created by
- 11:59 Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) created by
- The left sequence position indicator shows zero, when it should show …
- 00:55 Ticket #39 (sidebar rendering problems) created by
- When there were more than 3 sequences the SequenceBrowserWidget's …
- 00:50 Ticket #4 (Aligned sequence view) closed by
- fixed: [119] seems to at least basically work. I think the reverse …
03/19/2006:
- 16:13 Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) closed by
- fixed
- 16:13 Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) created by
- 01:53 Ticket #37 (Skateboard Shoes) created by
- Somewhere there's an off by one error that only affects the leftbase …
- 01:04 Ticket #36 (Make zoom widget make sense) closed by
- fixed
03/18/2006:
- 01:02 Ticket #36 (Make zoom widget make sense) created by
- The current calculation for the zoom widget is rather odd. It'd be …
03/17/2006:
- 17:11 Ticket #35 (Zoom Icon) closed by
- fixed: See changeset:111
- 16:49 Ticket #35 (Zoom Icon) created by
- Zoom icon for zoom spin box.
- 16:38 Ticket #34 (Unused variable 'max_range' in 'void ...) created by
- qui/seqbrowser/ScrollableSequenceBrowser.cpp: In member function ‘void …
- 16:34 Ticket #32 (The trac pages should become the main mussa website) closed by
- fixed: That should be good enough for now... closing ticket.
- 16:32 WikiStart edited by
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- 16:11 MussaFltk edited by
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- 16:06 WikiStart edited by
- links to tickets. (diff)
- 16:03 WikiStart edited by
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- 16:01 WikiStart edited by
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- 15:56 WikiStart edited by
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- 15:49 WikiStart edited by
- Adding documentation links. (diff)
- 15:46 MussaglBuild edited by
- (diff)
- 15:45 MussaglBuild created by
- Basic build information (needs work)
- 15:31 darcs edited by
- (diff)
- 15:29 darcs edited by
- directions for checking out a copy of mussagl from darcs repository. (diff)
- 15:11 darcs edited by
- creating darcs instructions (in progress) (diff)
- 15:07 darcs edited by
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- 15:07 darcs created by
- 15:02 WikiStart edited by
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- 15:00 WikiStart edited by
- Adding download information (slowly) (diff)
- 14:54 WikiStart edited by
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- 14:52 WikiStart edited by
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- 14:48 WikiStart edited by
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- 14:43 MussaFltk edited by
- Mussa C++/FLTK (diff)
- 14:39 MussaFltk created by
- 14:36 WikiStart edited by
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- 14:29 MussaProtoype edited by
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- 14:28 MussaProtoype edited by
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- 14:26 MussaPrototypeCommandline edited by
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- 14:26 MussaPrototypeCommandline created by
- 14:24 MussaProtoype created by
- 14:21 WikiStart edited by
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- 14:19 WikiStart edited by
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- 14:19 WikiStart edited by
- Info on mussa versions (diff)
- 13:49 WikiStart edited by
- cartwheel link (diff)
- 13:42 WikiStart edited by
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- 13:41 transitivity edited by
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- 13:40 transitivity created by
- 13:39 WikiStart edited by
- Porting useful information from old mussa website to trac wiki (easier … (diff)
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