Timeline
11/17/2006:
- 15:42 Ticket #237 (Crashing with invalid file name) closed by
- fixed: closed by [485]. Boost::Filesystem is picky, I really need to remember …
11/16/2006:
- 16:57 Ticket #237 (Crashing with invalid file name) created by
- Some character in the name …
11/14/2006:
- 13:48 Milestone release_1.0 completed
- This is for things that need to be done for "release 1.0"
- 13:48 Milestone document_1.0 completed
- finish off updating the documentation for our initial release.
11/02/2006:
- 16:39 WikiFormatting edited by
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- 16:39 TracSearch edited by
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- 16:39 WikiProcessors edited by
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- 16:39 TracTimeline edited by
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- 16:39 WikiRestructuredTextLinks edited by
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- 16:39 TracBrowser edited by
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- 16:39 TracCgi edited by
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- 16:39 TracIni edited by
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- 16:39 TracRss edited by
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- 16:39 TracBackup edited by
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- 16:39 TracPermissions edited by
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- 16:39 TracImport edited by
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- 16:39 TracInstall edited by
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- 16:39 TracPlugins edited by
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- 16:39 TracSyntaxColoring edited by
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- 16:39 TracLinks edited by
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- 16:39 InterTrac created by
- 16:39 InterWiki created by
- 16:39 TracQuery edited by
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- 16:39 TracUnicode edited by
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- 16:39 TracUpgrade edited by
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- 16:39 WikiNewPage edited by
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- 16:39 TracWiki edited by
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- 16:39 TracSupport edited by
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- 16:39 InterMapTxt created by
- 16:39 TracStandalone edited by
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- 16:39 TracRevisionLog created by
- 16:39 TracInterfaceCustomization edited by
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- 16:39 TracAdmin edited by
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- 16:39 WikiHtml edited by
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- 16:39 WikiPageNames edited by
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- 16:39 WikiRestructuredText edited by
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- 16:39 CamelCase edited by
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- 16:39 TracTickets edited by
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- 16:39 TracFastCgi edited by
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- 16:39 WikiMacros edited by
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- 16:39 TracAccessibility edited by
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- 16:39 TracTicketsCustomFields edited by
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- 16:39 TracNotification edited by
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- 16:39 TracRoadmap edited by
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- 16:39 WikiDeletePage edited by
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- 16:39 TracChangeset edited by
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- 16:39 TracEnvironment edited by
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- 16:39 TracReports edited by
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- 16:39 TracModPython edited by
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11/01/2006:
- 15:56 WikiStart edited by
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- 15:55 WikiStart edited by
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- 15:42 WikiStart edited by
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- 15:41 WikiStart edited by
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- 15:41 WikiStart edited by
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- 15:25 WikiStart edited by
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- 15:07 WikiStart edited by
- Describe binary builds (diff)
- 13:15 WikiStart edited by
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- 13:14 WikiStart edited by
- Prepping for wiki for offical 1.0 release (diff)
- 10:10 Ticket #235 (set version to 1.0 in version.h) closed by
- fixed: Changeset [481]
- 09:49 Ticket #152 (Update mussa_manual.adp to latest tutorial version) closed by
- fixed: Done in change set [478].
10/30/2006:
- 12:52 Ticket #236 (Error parsing annotation file should also include the filename in the ...) closed by
- fixed: [474] implements this.
- 12:22 Ticket #158 (When unable to parse a fasta file report its name) closed by
- fixed
- 10:56 Ticket #236 (Error parsing annotation file should also include the filename in the ...) created by
- Much like ticket:158
- 10:47 Ticket #210 (see about removing some of the wasted border width on the sidebars) closed by
- wontfix: Eh, this isn't worth it. Use the hide sidebar option.
10/27/2006:
- 18:57 Ticket #182 (Mussa views need vertical scrolls) closed by
- fixed: [470] changes SequenceBrowserWidget to inherit from QScrollArea. the …
- 18:56 Ticket #233 (when first displaying mussa the tracks aren't sized to the available ...) closed by
- fixed: [469] brute forces a sizeHint to make this work.
- 18:22 Ticket #235 (set version to 1.0 in version.h) created by
- when releasing lets set the version number.
- 18:08 Ticket #213 (Document how to deselect tracks/paths) closed by
- fixed: Done in change set [467].
- 18:08 Ticket #170 (After implementing ticket:164, update 'Load Mupa' section to link to ...) closed by
- fixed: Done in change set [467].
- 17:58 Ticket #225 (Document mussagl command line option) closed by
- fixed: Done in change set [465].
- 17:56 Ticket #162 (Mussa manual: Update major new features section) closed by
- fixed
- 17:55 Ticket #168 (Mussa manual: Update Mac OS X install instructions) closed by
- fixed: Done in change set [466].
- 17:55 Ticket #214 (Document why sub-analysis exists) closed by
- fixed: Done in change set [466].
- 17:54 Ticket #234 (Document * in title when there are unsaved changes) created by
- See ticket:194.
- 17:53 Ticket #233 (when first displaying mussa the tracks aren't sized to the available ...) created by
- little bits of the sequence is hidden by the sidebars for some unknown …
- 17:52 Ticket #232 (Document the report bp copied number.) created by
- See ticket #211 for more information.
- 17:50 Ticket #231 (Document copy and paste into motif editor now functional.) created by
- 17:31 Ticket #137 (Document why Base pair match lines on the sequence view don't always ...) closed by
- fixed: Done in change set [465].
- 17:30 Ticket #227 (Document Python useage in Mussagl) closed by
- fixed: Done in change set [465].
- 17:30 Ticket #167 (Add an "Understanding Mussa" section to manual.) closed by
- fixed: Done in change set [465].
- 17:29 Ticket #164 (Include a section on creating a .mupa file using the smn1 data.) closed by
- fixed: Done in change set [465].
- 17:24 Ticket #178 (Update all screenshots to latest version of Mussa.) closed by
- fixed: Done
- 16:37 MussaglAnimated edited by
- (diff)
- 16:33 MussaglAnimated created by
- 16:26 WikiStart edited by
- testing (diff)
- 15:37 Ticket #230 (shipit script should ship source distribution too.) created by
- 15:36 Ticket #229 (Package Everything for 1.0) created by
- Include documentation and a source distribution.
- 14:22 Ticket #228 (Allow more vertical collapse of description widgets) created by
- In order to cram more tracks on a screen, we might want to be allowed …
- 14:13 Ticket #217 (Use QtDesktopServices for openURL) closed by
- fixed: Implemented in [464]. Also this means we dependon Qt 4.2, but loose …
- 11:00 Ticket #194 (use window feedback to show that there are unsaved changes) closed by
- fixed: [463] implemented
- 10:48 WikiStart edited by
- Added some contact information. (diff)
- 10:44 Ticket #227 (Document Python useage in Mussagl) created by
- It might be useful to let people know there is some features for …
- 10:33 WikiStart edited by
- Try to include some contact information... js test. (diff)
- 10:17 Ticket #226 (QtTest is now a framework) created by
- Need to update cmakes scripts to handle qt 4.2
10/26/2006:
- 16:13 Ticket #225 (Document mussagl command line option) created by
- It would be useful to document the Mussa command line options.
- 15:33 Ticket #215 (You should be able to paste into the motif editor) closed by
- fixed: Resolved [461] (it was actually a problem with the copy always being a …
- 15:05 Ticket #224 (Define a common base class between MussaWindow and MussAlignedWindow) created by
- I'm starting to duplicate code between the two classes like copying …
- 13:47 Ticket #211 (Report how many basepairs are copied) closed by
- fixed: The basic version that reports the sum of base pairs copied was …
- 10:14 Ticket #223 (Set the Window Icon to be the Mussa icon) closed by
- fixed: Done in change set [459].
- 10:13 Ticket #223 (Set the Window Icon to be the Mussa icon) created by
- Mussa Window + Icon = Finding minimized Mussa easier.
10/25/2006:
- 17:12 Ticket #222 (Allow hyperlink annotations for CDS to PyMol rendering of protein structure) created by
- Especially with highlighting where the chunk of dna shows up on protein.
- 15:30 Ticket #221 (Discover/document effect of ordering species on analysis run times.) created by
- Discover/document effect of ordering species on analysis run times.
- 14:00 Ticket #220 (mussa command line seems to be broken...) created by
- I have been trying to run mupa files from the command line, but it …
10/24/2006:
- 17:12 Ticket #219 (Reordering sequences in an analysis would be really nice) created by
- Gee I wish I could click on a sequence track and drag it into a …
- 14:25 Ticket #207 (Reenable GUI tests) closed by
- fixed
- 14:21 Ticket #218 (Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog) created by
- One fo the neat new features of 4.2 was it had a way of putting …
- 13:47 Ticket #217 (Use QtDesktopServices for openURL) created by
- Qt 4.2 has an openURL command
10/23/2006:
- 17:46 Ticket #216 (subanalysis doesn't call setSoftThreshold to after finishing analysis) closed by
- fixed: fixed in [456]
10/20/2006:
- 17:51 Ticket #216 (subanalysis doesn't call setSoftThreshold to after finishing analysis) created by
- So when you first look at a display it's not showing the lowest level …
- 17:11 Ticket #215 (You should be able to paste into the motif editor) created by
- 17:07 Ticket #214 (Document why sub-analysis exists) created by
- Document the reason for sub-analysis. Meaning mention that you can run …
- 16:44 Ticket #213 (Document how to deselect tracks/paths) created by
- 16:43 Ticket #212 (ESC key should by bound to 'deselect' current selection.) created by
- 13:22 Ticket #211 (Report how many basepairs are copied) created by
- The question is how to handle it when sequences on multiple tracks are …
- 13:20 Ticket #210 (see about removing some of the wasted border width on the sidebars) created by
- 13:19 Ticket #209 (Extend the command line parsing to allow fully specifying an analysis) created by
- This would be useful so I could use make to more easily run/update …
- 13:17 Ticket #208 (the alg unittest executable needs to be broken up) created by
- ./alg/test/unittest is taking too long to run, I should probably split …
- 13:15 Ticket #207 (Reenable GUI tests) created by
- For some reason some the Qt specific tests wouldn't build correctly on …
- 12:06 Ticket #206 (We need some way of indicating Ns) created by
- perhaps narrowing the sequence track to show where Ns are would help?
- 11:40 Ticket #205 (Add button for autofitting sequence to window) created by
- Brandon even reminded me that there's even code for it, we just need …
- 11:08 Ticket #204 (When you resize a mussa window, resize the drawing too.) created by
- 10:15 Ticket #203 (Unit test the code that generates all the mussa filename) created by
- This will require pulling the naming code out into seperate functions …
- 00:27 Ticket #202 (Investigate SIP instead of boost::python) created by
- The hope is that perhapis it'd be easier to export mussa classes to pyqt?
- 00:11 Ticket #201 (Run analyses in worker thread) created by
- [108] depends on this. Allow at leas some actions to run in seperate …
10/19/2006:
- 18:38 Ticket #199 (After [451] I noticed that subanalyses didn't seem to have motif ...) closed by
- fixed: [452] copies the motifs over to a subanalysis (after clearing) any …
- 18:37 Ticket #200 (Pushing the threshold change button too fast will cause mussa to crash) closed by
- fixed: [453] is a good enough solution. Though I might someday want to use …
- 17:20 Ticket #163 (Motif loading doesn't work with release builds) closed by
- fixed
- 17:20 Ticket #200 (Pushing the threshold change button too fast will cause mussa to crash) created by
- the quick hack i can think of is to disable the widget while the …
- 16:35 Ticket #199 (After [451] I noticed that subanalyses didn't seem to have motif ...) created by
- Actually it was even worse in that it had an odd spurious motif added …
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