Timeline



Mar 20, 2006:

5:35 PM Ticket #44 (Computation of reverse compliment colors is buggy) created by diane
For both types of links (mussa windows and base pair alignments) the …
5:23 PM Ticket #37 (Skateboard Shoes) closed by diane
fixed: Computations involving ceil hurt my head... I had ceil(left) - seq_x …
4:08 PM Ticket #42 (when resizing you should see more basepairs, not make them bigger.) closed by diane
fixed
4:07 PM Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) closed by anonymous
fixed
4:02 PM Ticket #37 (Skateboard Shoes) reopened by diane
3:19 PM Ticket #37 (Skateboard Shoes) closed by diane
fixed: it magically went away.
2:13 PM Ticket #43 (After scrolling a sequence browser window, selection boxes break) created by diane
The selection box doesn't work correctly when you've scrolled the …
1:55 PM Ticket #42 (when resizing you should see more basepairs, not make them bigger.) created by diane
When resizing the window instead of "zooming" you should see more base …
1:48 PM Ticket #41 (Selection box jumps slightly to the right of the rubber band) created by diane
11:59 AM Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) created by diane
The left sequence position indicator shows zero, when it should show …
12:55 AM Ticket #39 (sidebar rendering problems) created by diane
When there were more than 3 sequences the SequenceBrowserWidget's …
12:50 AM Ticket #4 (Aligned sequence view) closed by diane
fixed: [119] seems to at least basically work. I think the reverse …

Mar 19, 2006:

4:13 PM Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) closed by diane
fixed
4:13 PM Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) created by diane
1:53 AM Ticket #37 (Skateboard Shoes) created by diane
Somewhere there's an off by one error that only affects the leftbase …
1:04 AM Ticket #36 (Make zoom widget make sense) closed by diane
fixed

Mar 18, 2006:

1:02 AM Ticket #36 (Make zoom widget make sense) created by diane
The current calculation for the zoom widget is rather odd. It'd be …

Mar 17, 2006:

5:11 PM Ticket #35 (Zoom Icon) closed by king
fixed: See changeset:111
4:49 PM Ticket #35 (Zoom Icon) created by king
Zoom icon for zoom spin box.
4:38 PM Ticket #34 (Unused variable 'max_range' in 'void ...) created by king
qui/seqbrowser/ScrollableSequenceBrowser.cpp: In member function ‘void …
4:34 PM Ticket #32 (The trac pages should become the main mussa website) closed by king
fixed: That should be good enough for now... closing ticket.
4:32 PM WikiStart edited by king
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4:31 PM WikiStart edited by king
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4:30 PM WikiStart edited by king
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4:28 PM WikiStart edited by king
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4:26 PM WikiStart edited by king
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4:26 PM WikiStart edited by king
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4:26 PM WikiStart edited by king
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4:25 PM WikiStart edited by king
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4:11 PM MussaFltk edited by king
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4:06 PM WikiStart edited by king
links to tickets. (diff)
4:03 PM WikiStart edited by king
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4:01 PM WikiStart edited by king
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3:56 PM WikiStart edited by king
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3:49 PM WikiStart edited by king
Adding documentation links. (diff)
3:46 PM MussaglBuild edited by king
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3:45 PM MussaglBuild created by king
Basic build information (needs work)
3:31 PM darcs edited by king
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3:29 PM darcs edited by king
directions for checking out a copy of mussagl from darcs repository. (diff)
3:11 PM darcs edited by king
creating darcs instructions (in progress) (diff)
3:07 PM darcs edited by king
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3:07 PM darcs created by king
3:02 PM WikiStart edited by king
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3:00 PM WikiStart edited by king
Adding download information (slowly) (diff)
2:54 PM WikiStart edited by king
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2:52 PM WikiStart edited by king
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2:48 PM WikiStart edited by king
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2:43 PM MussaFltk edited by king
Mussa C++/FLTK (diff)
2:39 PM MussaFltk created by king
2:36 PM WikiStart edited by king
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2:35 PM WikiStart edited by king
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2:34 PM WikiStart edited by king
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2:33 PM WikiStart edited by king
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2:29 PM MussaProtoype edited by king
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2:28 PM MussaProtoype edited by king
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2:26 PM MussaPrototypeCommandline edited by king
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2:26 PM MussaPrototypeCommandline created by king
2:24 PM MussaProtoype created by king
2:21 PM WikiStart edited by king
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2:19 PM WikiStart edited by king
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2:19 PM WikiStart edited by king
Info on mussa versions (diff)
1:49 PM WikiStart edited by king
cartwheel link (diff)
1:42 PM WikiStart edited by king
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1:41 PM transitivity edited by king
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1:41 PM 4way_trans.png attached to transitivity by king
1:40 PM transitivity created by king
1:39 PM WikiStart edited by king
Porting useful information from old mussa website to trac wiki (easier … (diff)

Mar 16, 2006:

11:26 PM Ticket #24 (Clean up the signals and slots) closed by diane
fixed: It could've been more refactored, but the API is fairly …
8:58 PM Ticket #33 (changing threshold can cause the UI to freeze) created by diane
For larger datasets, the length of time it takes to recompute the nway …
7:10 PM Ticket #32 (The trac pages should become the main mussa website) created by diane
The trac pages should become the main mussa page. Preferably with …
6:02 PM WikiStart edited by king
(diff)
6:01 PM OriginalTracStartPage created by king
Moving the trac start page out of the way.
6:01 PM WikiStart edited by king
(diff)
5:20 PM Ticket #31 (Threshold Widget should use spinboxes) created by diane
There are some weaknesses with the slider bar approach for the mussa …
3:19 PM Ticket #30 (Allow "leave one out" nway transitive searches) created by diane
It would be really useful if a path could still be drawn even if it …
3:18 PM Ticket #29 (Connect to Core Match) created by diane
Integrate tony's core match algorithm. (Hmm... might also want to …
11:14 AM Ticket #28 (Allow user to force a loaded sequence to be reverse complimented.) created by diane
When loading a sequence, it'd be nice to be able indicate that it …
11:02 AM Ticket #27 (Collect example sequences) created by diane
mck5 myogenin (stevens worm region) myf4/myf5 big region test case …
10:57 AM Ticket #26 (SubAnalysis mode) created by diane
Implement some form of subanalysis mode (last original mussa feature).
1:03 AM Ticket #25 (broke motif colors) closed by diane
fixed
12:46 AM Ticket #25 (broke motif colors) created by diane
12:39 AM Ticket #24 (Clean up the signals and slots) created by diane
I don't think I've set up the signals & slots for updating the various …
12:37 AM Ticket #3 (View descriptions) closed by diane
fixed: It works though the formatting isn't good, and the class hierarchy …
12:16 AM Ticket #23 (The threshold widget was broken too) closed by diane
fixed
12:16 AM Ticket #23 (The threshold widget was broken too) created by diane
The change to segment based drawing broke the threshold widget, as …
12:12 AM Ticket #22 (default size hint broken) closed by diane
fixed

Mar 15, 2006:

7:25 PM Ticket #22 (default size hint broken) created by diane
When launching mussagl without any analysis, it doesn't pick a …
5:57 PM Ticket #16 (figure out how to get selections to work with new segment based drawing) closed by diane
fixed: Whenever I close a ticket I seem to immediately open a new one, …
5:50 PM Ticket #21 (Implement a better way of handling the GL selection buffer) created by diane
The current opengl selection code uses a hard coded buffer size, which …
2:08 PM Ticket #19 (I broke the scrollbar too) closed by diane
fixed: Calls to setLayout from within the QGLWidget derived class' …
12:02 PM Ticket #20 (Toggle Motif Button Implementation) created by king
Make motifs go away... we don't like them... well some times we do.
11:23 AM Ticket #19 (I broke the scrollbar too) created by diane
The new draw code also broke the scroll bar. And is there a chance to …
2:37 AM Ticket #18 (segments should indicate if they're both forward and reveresed) created by diane
a segment should track forward and reverse compliment separately, as …
2:09 AM Ticket #17 (Allow user to specify an offset for base pair location label) created by diane
In order to make it easer to map some random fasta file back to the …
2:00 AM Ticket #16 (figure out how to get selections to work with new segment based drawing) created by diane
Though the new segment based drawing is faster it does make selection …
1:58 AM Ticket #2 (Connection view) closed by diane
fixed

Mar 14, 2006:

2:26 PM Ticket #15 (Unify build system) created by diane
It'd be nice if I didn't have to deal with both the qmake-qt4 derived …
12:16 AM Ticket #14 (Motifs need to be creatable and editable from within the GUI) created by diane
I hacked in loading motifs from a file, but there really should be …
12:11 AM Ticket #12 (modify motifs attached to an analysis) closed by diane
fixed: Splattering done. User interface missing.
12:10 AM Ticket #13 (AnnotationColor mapper needs a user interface) created by diane
One might imagine that users would actually like to edit colors by …
12:05 AM Ticket #1 (Annotation color mapper) closed by diane
fixed: The colors are tracked, but there's no UI. I'm going to close this …

Mar 13, 2006:

6:03 PM Ticket #12 (modify motifs attached to an analysis) created by diane
There are many ways of going about this, ticket:10 for instance. …
5:54 PM Ticket #11 (create unifed sequence type) created by diane
There are many different types of things that we attach to a sequence, …
12:17 AM Ticket #10 (Integrate motifs with annotations) created by diane
The old code treated motifis and annotations differently. I think …

Mar 12, 2006:

11:52 AM Ticket #9 (Connect to cartwheel) created by diane
Can we connect to cartwheel and be both a front end for cartwheel and …
11:50 AM Ticket #8 (Per species thresholds) created by diane
One requested feature was that one could set the threshold of …
11:49 AM Ticket #7 (Reuse seqcomps) created by diane
When running a batch of analysis mussa doesn't understand that its …
11:47 AM Ticket #6 (Analysis saving is smelly) created by diane
Analysis saving uses system calls to make a directory and splatter a …

Mar 11, 2006:

11:47 PM Ticket #5 (Configure a mussa analysis from the Gui) created by diane
Need to be able to provide the sequence and parameters needed to run a …
11:46 PM Ticket #4 (Aligned sequence view) created by diane
In addition to the view showing the connections between different …
11:44 PM Ticket #3 (View descriptions) created by diane
Users should be able to see things describing a sequence track, like …
11:43 PM Ticket #2 (Connection view) created by diane
Provide a GL widget like thing that handles the linking of base pair …
11:40 PM Ticket #1 (Annotation color mapper) created by diane
We need some way of tracking the colors an annotation (and motifs) …

Mar 6, 2006:

4:34 PM TracReports created by trac
4:34 PM TracModPython created by trac
4:34 PM TracNotification created by trac
4:34 PM RecentChanges created by trac
4:34 PM TracRoadmap created by trac
4:34 PM WikiDeletePage created by trac
4:34 PM TracChangeset created by trac
4:34 PM TracEnvironment created by trac
4:34 PM TracFastCgi created by trac
4:34 PM WikiMacros created by trac
4:34 PM TracLogging created by trac
4:34 PM TracAccessibility created by trac
4:34 PM TracTicketsCustomFields created by trac
4:34 PM WikiHtml created by trac
4:34 PM WikiStart created by trac
4:34 PM WikiPageNames created by trac
4:34 PM WikiRestructuredText created by trac
4:34 PM CamelCase created by trac
4:34 PM TracTickets created by trac
4:34 PM TracSupport created by trac
4:34 PM TracStandalone created by trac
4:34 PM TracInterfaceCustomization created by trac
4:34 PM TracAdmin created by trac
4:34 PM SandBox created by trac
4:34 PM TracGuide created by trac
4:34 PM TracLinks created by trac
4:34 PM TracQuery created by trac
4:34 PM TracUnicode created by trac
4:34 PM TracUpgrade created by trac
4:34 PM WikiNewPage created by trac
4:34 PM TitleIndex created by trac
4:34 PM TracWiki created by trac
4:34 PM TracBackup created by trac
4:34 PM TracPermissions created by trac
4:34 PM TracImport created by trac
4:34 PM TracInstall created by trac
4:34 PM TracPlugins created by trac
4:34 PM TracSyntaxColoring created by trac
4:34 PM TracTimeline created by trac
4:34 PM WikiRestructuredTextLinks created by trac
4:34 PM TracBrowser created by trac
4:34 PM TracCgi created by trac
4:34 PM TracIni created by trac
4:34 PM TracRss created by trac
4:34 PM WikiFormatting created by trac
4:34 PM TracSearch created by trac
4:34 PM WikiProcessors created by trac
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