Timeline
Oct 4, 2006:
- 3:20 PM Ticket #10 (Integrate motifs with annotations) closed by
- duplicate: The move to turn motifs and annotations into specializations of …
- 3:11 PM Ticket #145 (Use titus' paircomp and motility) created by
- One of my concerns is how to pull his code into mussa in a way that is …
- 3:02 PM Ticket #143 (add command line option to annotate an analysis with a motif file.) closed by
- fixed: [395] added the command line option.
- 10:09 AM Ticket #144 (IUPAC codes are destroyed by the sequence normalization code) created by
- when searching for a motif the sequence class feeds things through a …
Oct 3, 2006:
- 6:17 PM Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) closed by
- fixed: [388] implements this.
- 6:17 PM Ticket #140 (Load Motifs doesn't do anything) closed by
- fixed: [394] and [393] fix this. The parser wasn't working and then the …
- 6:16 PM Ticket #138 (Sequence view window needs a title) closed by
- fixed: [391] implements this and also fills in the other window titles.
- 3:19 PM Ticket #143 (add command line option to annotate an analysis with a motif file.) created by
- since you can load an analysis and create a new analysis from the …
Oct 2, 2006:
- 2:56 PM Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) created by
- 2:55 PM Ticket #141 (Vector output) created by
- It'd be really nice if we could generate vector output, both for …
- 2:54 PM Ticket #140 (Load Motifs doesn't do anything) created by
- It appears that the Load Motif menu option either doesn't load motifs …
- 2:46 PM Ticket #139 (Edit motif window looses motif information when closed) created by
- It really should reload the motif information from the analysis when …
Sep 29, 2006:
Sep 28, 2006:
Sep 27, 2006:
- 5:38 PM Ticket #137 (Document why Base pair match lines on the sequence view don't always ...) created by
- in cases where there's a match between the first and second sequence …
- 12:22 AM Ticket #136 (allow absolute positioning) created by
- I think i can allow absolute positioning if I made the "location" base …
Sep 25, 2006:
- 10:14 AM Ticket #135 (Win32: Save as not working... causes crash.) closed by
- fixed: Fixed in changeset:381. boost::filesystem needed to be told to use …
Sep 22, 2006:
- 4:30 PM Ticket #135 (Win32: Save as not working... causes crash.) created by
- On windows the Save As feature causes a crash.
Sep 21, 2006:
- 2:26 PM Ticket #134 (Width of seqcomp match line is wrong) created by
- It might be useful if the seqcomp match lines being drawn were …
- 1:23 PM OSXUniversalDependencies edited by
- (diff)
Sep 19, 2006:
- 4:49 PM Ticket #133 (Should be able to save motifs) created by
- It looks like the best path is that when saving an analysis it'll also …
Sep 18, 2006:
- 4:24 PM Ticket #125 (autodetect if python needs -lutil) closed by
- fixed: Fixed with [375] and [376] Pretty nice of distutils to provide a way …
Sep 15, 2006:
- 5:14 PM Ticket #105 (Load Analysis should spawn a new window) closed by
- fixed: Technically the create from mupa file should open a new window too, …
- 5:09 PM Ticket #132 (Make open saved analysis open a new window) closed by
- duplicate: duplicate of ticket:105
- 5:02 PM Ticket #132 (Make open saved analysis open a new window) created by
- I can make open saved analysis open a new window if the window isn't …
- 3:55 PM Ticket #131 (When closing an analysis window, cancel doesn't prevent the close) created by
- Brandon tried to close a subanalysis window that hadn't been saved. It …
- 3:34 PM Ticket #130 (Save is relative to the current directory) closed by
- fixed: implemented [370] though I started [372] because I forgot that I'd …
- 11:52 AM Ticket #130 (Save is relative to the current directory) created by
- Mussa doesn't save the path it was loaded from, so when save a …
- 11:11 AM Ticket #129 (Subseq doesn't support trees correctly) closed by
- fixed: Implemented [367]
Sep 14, 2006:
- 5:47 PM Ticket #129 (Subseq doesn't support trees correctly) created by
- Currently subseq's start/count is always relative to the seq_string, …
- 2:12 PM Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) closed by
- fixed: fixed in [363]
- 1:12 PM Ticket #128 (the editable sequence name only shows the end of long names.) closed by
- fixed: fixed [362] ( I think I spent more time on bug tracking than bug …
- 1:06 PM Ticket #128 (the editable sequence name only shows the end of long names.) created by
- Not terribly important but a long name like "tetraodon" only shows the …
- 1:05 PM Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) created by
- The layout doesn't put the first description block at the very top …
Sep 13, 2006:
- 6:38 PM Ticket #126 (Figure out how to get the spirit parsers to report parse errors) created by
- The annotation parser and the motif parser are now both using the …
- 6:36 PM Ticket #116 (Perhaps the motif file should have a name field.) closed by
- fixed: implmented in [361] with the caveat that my spirit parsers don't throw …
- 3:52 PM Ticket #73 (Performance problems doing analysis) closed by
- invalid: This ticket was mostly gathering information about what influences …
- 3:36 PM Ticket #125 (autodetect if python needs -lutil) created by
- On Fedora core the version of python requires being linked with …
- 3:35 PM Ticket #124 (report patch version) created by
- Brandon suggested that it'd be useful for mussa to have some version …
- 3:33 PM Ticket #123 (Allow hiding sidebars) created by
- Tristan complained briefly about the sidebars taking up too much …
Sep 12, 2006:
- 6:21 PM Ticket #101 (On windows, the file browse button doesn't remember the previous path) closed by
- fixed: Actually this applied to the os x (and probably linux) versions as …
- 5:31 PM Ticket #122 (Motif editor needs to support more than 10 motifs) created by
- I really should be using one of the Qt MVC classes to let the number …
- 5:13 PM Ticket #107 (Motifs don't show up on the Mussa Aligned Sequence window anymore.) closed by
- worksforme: I'm going to pretend this is working at the moment. If someone …
- 5:11 PM Ticket #27 (Collect example sequences) closed by
- fixed: i've got lots of example sequence now... I don't think this is …
- 5:10 PM Ticket #114 (Location analyses are saved to is ill-defined on OS X.) closed by
- fixed: [358] sets the default save as directory to the users home directory, …
- 4:57 PM Ticket #119 (Add dependencies to MussaglBuild page) closed by
- fixed: I think I've added the current set of dependencies.
Sep 11, 2006:
- 5:45 PM MussaglBuild edited by
- notes about python dependency. (diff)
- 5:43 PM MussaglBuild edited by
- (diff)
- 5:42 PM MussaglBuild edited by
- really we need cmake 2.4 (diff)
Sep 8, 2006:
- 10:13 PM Ticket #121 (the load_mupa function choaks when given something other than a file) closed by
- fixed: Fixed in [352]
- 5:01 PM Ticket #121 (the load_mupa function choaks when given something other than a file) created by
- The load_mussa code hangs when you run mussa --run <directoy name>.
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