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Ticket Summary Owner Type Priority Milestone Component
#63 with two sequences the align sequence view doesn't show any connections diane defect critical Few Small Repairs Qt Gui
#42 when resizing you should see more basepairs, not make them bigger. diane defect minor Bionic Mussa Qt Gui
#233 when first displaying mussa the tracks aren't sized to the available viewport on os x diane defect major release_1.1 Qt Gui
#194 use window feedback to show that there are unsaved changes diane enhancement trivial release_1.1 Qt Gui
#59 the washed out sequence should actually be partially transparent. diane defect major Few Small Repairs Qt Gui
#197 the subanalysis when using the original mck example draws lines off the sequence. diane defect major release_1.0 Qt Gui
#121 the load_mupa function choaks when given something other than a file diane defect major core
#128 the editable sequence name only shows the end of long names. diane defect trivial Few Small Repairs Qt Gui
#90 the arrow keys aren't connected to the scrollbar diane defect critical python interface
#208 the alg unittest executable needs to be broken up diane enhancement major unit tests core
#216 subanalysis doesn't call setSoftThreshold to after finishing analysis diane defect major release_1.0 Qt Gui
#39 sidebar rendering problems diane major Few Small Repairs Qt Gui
#180 shipit script on os x needs to validate the archive diane defect major release_1.0 other
#148 setup_analysis dialog should make sure that the threshold is not greater than the window size. diane defect minor Few Small Repairs Qt Gui
#235 set version to 1.0 in version.h diane task major release_1.0 other
#60 sequence alignment view needs zoom diane defect trivial Few Small Repairs core
#45 recreate os x bless script diane task major Bionic Mussa Qt Gui
#94 quits at viewing allignment diane defect major Few Small Repairs Qt Gui
#91 quits diane defect major Few Small Repairs Qt Gui
#154 off by one error when drawing segments diane defect blocker Few Small Repairs Qt Gui
#85 mussagl quits, just like i will AGAIN soon. diane defect critical Few Small Repairs core
#69 motifs may not be rendering corectly diane critical Few Small Repairs Qt Gui
#12 modify motifs attached to an analysis diane task major Bionic Mussa Qt Gui
#46 link in icons diane defect minor Few Small Repairs Qt Gui
#244 len(mussa.paths()) returns number of tracks, not the number of paths found diane defect major release_1.1 python interface
#16 figure out how to get selections to work with new segment based drawing diane defect major Bionic Mussa Qt Gui
#160 error: default argument for parameter of type ‘MussaRef’ has type ‘int’ king defect major Few Small Repairs Qt Gui
#22 default size hint broken diane defect trivial Few Small Repairs Qt Gui
#33 changing threshold can cause the UI to freeze diane defect major Standing on our heads Qt Gui
#25 broke motif colors diane defect major Bionic Mussa Qt Gui
#125 autodetect if python needs -lutil diane defect major Few Small Repairs Qt Gui
#143 add command line option to annotate an analysis with a motif file. diane enhancement major Few Small Repairs Qt Gui
#35 Zoom Icon diane minor Few Small Repairs Qt Gui
#215 You should be able to paste into the motif editor diane enhancement critical release_1.1 Qt Gui
#120 Windows doesn't have python installed by default diane enhancement major Few Small Repairs Qt Gui
#135 Win32: Save as not working... causes crash. king defect critical Few Small Repairs Qt Gui
#146 Win32: Create new analysis mystery crash king defect blocker Few Small Repairs Qt Gui
#134 Width of seqcomp match line is wrong diane defect blocker Few Small Repairs Qt Gui
#158 When unable to parse a fasta file report its name diane enhancement critical release_1.1 Qt Gui
#240 When there are no matches, mussa doesn't seem to display anything king defect minor release_1.1 Qt Gui
#3 View descriptions diane defect major Bionic Mussa Qt Gui
#217 Use QtDesktopServices for openURL diane enhancement major release_1.1 Qt Gui
#152 Update mussa_manual.adp to latest tutorial version king task minor document_1.0 other
#178 Update all screenshots to latest version of Mussa. king task major document_1.0 other
#166 Update Mussa summary screenshot to latest version king task major document_1.0 other
#190 Update 'save motifs' section after close of ticket #188. king task minor document_1.0 other
#181 Update 'Load a mussa parameter file' section king task major document_1.0 other
#173 Update "Sequence Information Bar" section, as it has changed in latest version. king enhancement minor document_1.0 other
#169 Update "New Analysis" section as the Dialog box has changed. king task major document_1.0 other
#191 Update "Motif Dialog" section king enhancement major document_1.0 other
#185 Update "Load an analysis" section (text/screenshots) king task major document_1.0 other
#172 Update "Dynamic Threshold" section as the widget has changed. king enhancement major document_1.0 other
#34 Unused variable 'max_range' in 'void ScrollableSequenceBrowser::updateScrollBar()' diane defect minor Few Small Repairs Qt Gui
#15 Unify build system diane defect major Few Small Repairs core
#118 Tracks need an edit properites option. diane enhancement major Few Small Repairs Qt Gui
#20 Toggle Motif Button Implementation king defect minor Few Small Repairs Qt Gui
#31 Threshold Widget should use spinboxes diane major Few Small Repairs Qt Gui
#68 The web site should have the Caltech and possibly BMNC logo king major Few Small Repairs Qt Gui
#32 The trac pages should become the main mussa website king task major Bionic Mussa other
#23 The threshold widget was broken too diane defect major Bionic Mussa Qt Gui
#127 The sidebar layout isn't right after loading a second analysis into the same window diane defect major Few Small Repairs Qt Gui
#75 The scrollbar navigation when zoomed in jumps too far diane defect critical Few Small Repairs Qt Gui
#115 The create an analysis screen create the sequences in the reverse order. diane defect minor Few Small Repairs Qt Gui
#66 The annotation for myogenin needs to be checked. diane major Few Small Repairs Qt Gui
#84 The analysis title should report what file you loaded diane trivial Standing on our heads Qt Gui
#50 Switch to using Qt4.1 resources (automatically compiles resources into binary). diane defect minor Few Small Repairs Qt Gui
#129 Subseq doesn't support trees correctly diane defect major Few Small Repairs Qt Gui
#109 Subanalysis sequence list wasn't being cleared diane defect major Few Small Repairs Qt Gui
#26 SubAnalysis mode diane enhancement critical Few Small Repairs Qt Gui
#254 Sub-analysis failing to draw paths on init king defect minor release_1.1 Qt Gui
#192 Steven can't save with mussa diane defect major release_1.0 Qt Gui
#147 Sometimes the width of a quadrallateral is too small diane defect trivial Few Small Repairs Qt Gui
#55 Somehow when reloading an analysis it needs to save threshold / window size diane defect critical Few Small Repairs Qt Gui
#37 Skateboard Shoes diane defect
#133 Should be able to save motifs diane enhancement critical Few Small Repairs core
#111 Set zero/alignment point for a sequence diane enhancement critical release_1.1 Qt Gui
#223 Set the Window Icon to be the Mussa icon king enhancement trivial release_1.0 Qt Gui
#138 Sequence view window needs a title diane defect major Few Small Repairs Qt Gui
#183 Seqcomp is case sensitive diane defect major release_1.0 core
#41 Selection box jumps slightly to the right of the rubber band diane task minor Bionic Mussa Qt Gui
#257 Saving analysis saves at current threshold king defect major release_1.1 Qt Gui
#52 Saved analysis needs to keep widow size and threshold for threshold widget diane defect minor Few Small Repairs Qt Gui
#251 Save to image crash king defect major release_1.1 Qt Gui
#96 Save to image broken king defect minor Few Small Repairs Qt Gui
#188 Save motifs action does not append .mtl or .txt by default diane enhancement minor release_1.0 Qt Gui
#130 Save is relative to the current directory diane defect major Few Small Repairs Qt Gui
#110 Running a subanalysis with nothing loaded causes the program to crash diane defect major Few Small Repairs Qt Gui
#78 Reverse compliment alignment lines dont seem to match up diane critical Few Small Repairs core
#211 Report how many basepairs are copied diane enhancement major release_1.1 Qt Gui
#239 Report error when trying to load a directory as an annotation. diane defect major release_1.1 core
#171 Remove the "Motif Toggle" button from manual. king defect major document_1.0 other
#207 Reenable GUI tests diane defect major unit tests Qt Gui
#226 QtTest is now a framework diane defect major release_1.1 other
#49 QAssistant Mussa Docs diane defect critical Few Small Repairs core
#200 Pushing the threshold change button too fast will cause mussa to crash diane defect major release_1.0 Qt Gui
#86 Progresss bar diane defect major Few Small Repairs Qt Gui
#116 Perhaps the motif file should have a name field. diane enhancement major Few Small Repairs core
#117 Perhaps our fasta loading file loader could detect if we're being fed an html file. diane defect major Qt Gui
#99 Percent threshold shouldn't be editable. diane enhancement blocker Few Small Repairs Qt Gui
#229 Package Everything for 1.0 diane task major release_1.0 other
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