Timeline
Apr 13, 2006:
- 1:02 PM Ticket #83 (Mussa should complain about misformatted fasta files instead of crashing.) closed by
- fixed: [180] fixes this
Apr 12, 2006:
- 4:29 PM Ticket #64 (Occasionally ConservedPath crashes) closed by
- fixed: I'm going to optimistcally assume that ticket:89 was a reliable way to …
- 4:28 PM Ticket #85 (mussagl quits, just like i will AGAIN soon.) closed by
- fixed: [178] fixes this.
- 1:14 PM Ticket #90 (the arrow keys aren't connected to the scrollbar) created by
- a small detail first. the arrows (left-right) on the bottom of the …
Apr 11, 2006:
- 6:01 PM Ticket #15 (Unify build system) closed by
- fixed
- 3:55 PM Ticket #89 (Blast to find mussa regions) created by
- its unclear if this is a good idea or not, but it might be …
- 2:03 PM Ticket #88 (Find titus' paper on FR versus the bacterial genomes) created by
- They had some conclusion about different models of evolution for the …
- 1:54 PM Ticket #87 (Autodetect threshold) created by
- It might be useful to autodetect a reasonable threshold…
- 11:21 AM Ticket #86 (Progresss bar) created by
- Some tasks take a long time to run, so we really should give some hint …
- 11:12 AM Ticket #85 (mussagl quits, just like i will AGAIN soon.) created by
- once the three way screen shot is active, if i try to click on the up …
- 12:47 AM Ticket #84 (The analysis title should report what file you loaded) created by
Apr 10, 2006:
Apr 9, 2006:
- 2:32 PM Ticket #83 (Mussa should complain about misformatted fasta files instead of crashing.) created by
- i entered 3 sequences using the browser function. two sequences were …
Apr 7, 2006:
- 12:40 AM Ticket #82 (Unit test python API) created by
- With the new cmake system I should make sure that I also test my boost …
Apr 6, 2006:
- 12:06 PM Ticket #81 (Storing and searching metadata) created by
- It'd be really really nice if there was some way that a person could …
Apr 4, 2006:
- 12:53 AM Ticket #74 (On OSX when maxmizing the sidebar stays on the GL canvas) closed by
- fixed: [162] changed from using QSplitter to just a QHBoxLayout (with sizing …
Mar 30, 2006:
- 3:50 PM Ticket #80 (Difference between analyses) created by
- It would be useful if you could load an analysis and then load a …
- 2:59 PM Ticket #68 (The web site should have the Caltech and possibly BMNC logo) closed by
- fixed: Changed to Caltech Logo.
- 11:48 AM Ticket #79 (It'd be nice if you could annotate by providing fasta files) created by
- Family relations does it... why cant mussa.
Mar 29, 2006:
- 10:59 PM Ticket #78 (Reverse compliment alignment lines dont seem to match up) created by
- As far as I can tell the lines connecting reverse compliments on the …
- 3:14 PM Ticket #77 (Font needs to be better...) created by
- Its hard to read…
- 2:57 PM Ticket #76 (Qt 4.1.1 crashes on barbara's computer) created by
- when going to the alignment view, when built on ali's computer it …
- 2:56 PM Ticket #75 (The scrollbar navigation when zoomed in jumps too far) created by
- When you navigate by dragging the thumb around on the sequence view …
- 2:26 PM Ticket #74 (On OSX when maxmizing the sidebar stays on the GL canvas) created by
- 1:24 PM MussaglBuild edited by
- Comment about versions of Qt4.1 (diff)
- 1:23 PM MussaglBuild edited by
- (diff)
- 12:26 AM Ticket #69 (motifs may not be rendering corectly) closed by
- fixed: [155] makes this bearable.
- 12:25 AM Ticket #71 (AnnotationColors don't always color motifs correctly) reopened by
Mar 28, 2006:
- 11:18 PM Ticket #71 (AnnotationColors don't always color motifs correctly) closed by
- duplicate: ticket:69 is very closely related.
- 10:55 PM Ticket #63 (with two sequences the align sequence view doesn't show any connections) closed by
- fixed: Fixed by [154]
- 9:46 PM Ticket #66 (The annotation for myogenin needs to be checked.) closed by
- fixed: I grabbed annotation for human and mouse from ucsc by clicking on the …
- 9:41 PM Ticket #60 (sequence alignment view needs zoom) closed by
- fixed
- 6:03 PM WikiStart edited by
- (diff)
Mar 27, 2006:
- 10:36 PM Ticket #34 (Unused variable 'max_range' in 'void ...) closed by
- fixed: Fixed in [110] (Someone needs to check my OCD, why did I go hunt that …
- 10:14 PM Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) closed by
- fixed: ticket:46 was a duplicate
- 10:14 PM Ticket #46 (link in icons) closed by
- fixed: ticket:50 is duplicate idea specifying an implementation for this. …
- 9:59 PM Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) closed by
- fixed: Dupe of ticket:55 this is effectively the same ticket as ticket:52, …
- 5:46 PM Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) closed by
- fixed
- 5:46 PM Ticket #31 (Threshold Widget should use spinboxes) closed by
- fixed
- 1:05 PM Ticket #73 (Performance problems doing analysis) created by
- Steven noticed that doing an analysis seemed far slower than with …
- 1:03 PM Ticket #72 (Myogenin human mouse rat cow chicken files are odd) created by
- In no case was I able to see the feature I had highlighted shown in …
- 1:01 PM Ticket #71 (AnnotationColors don't always color motifs correctly) created by
- I would show that on the sequence alignment view, some highlighted …
- 12:56 PM Ticket #70 (Need to be able to save screenshots in View Alignment Page) created by
- 1. when in view alignment screen, and you go to services to grab the …
Mar 24, 2006:
- 6:27 PM Ticket #69 (motifs may not be rendering corectly) created by
- Especially when moving around the sequence the motifs flash in and …
- 6:17 PM Ticket #68 (The web site should have the Caltech and possibly BMNC logo) created by
- We should look more professional, and use boring logos
- 6:14 PM Ticket #67 (You should be able to open multiple analyses) created by
- There should be a way to create multiple MussaAnalysis windows.
- 6:12 PM Ticket #57 (Define analysis is annoying) closed by
- fixed
- 6:10 PM Ticket #53 (Copy an example into the os x dmg) closed by
- fixed
- 6:09 PM Ticket #66 (The annotation for myogenin needs to be checked.) created by
- Also the color could be brighter.
- 6:07 PM Ticket #65 (It'd be neat if you could select a region and go to ucsc) created by
- This is also useful for fixing annotation problems
- 5:53 PM Ticket #64 (Occasionally ConservedPath crashes) created by
- don't have good examples to trigger it but I've seen it happen twice
- 5:41 PM Ticket #63 (with two sequences the align sequence view doesn't show any connections) created by
- I wonder if the alignment view needs at least 3 sequences to render?
- 5:32 PM Ticket #62 (Aligning sequence that has a reverse compliment doesn't fully align ...) created by
- I suspect the because the reverse compliment is based from the right …
- 5:30 PM Ticket #61 (For mac users it'd be useful to make double clicking on a data file ...) created by
- Of course somehow we'd need to make an analysis actually be …
- 5:29 PM Ticket #60 (sequence alignment view needs zoom) created by
- It'd be useful to zoom out a bit from the sequence aligned view to …
- 5:27 PM Ticket #59 (the washed out sequence should actually be partially transparent.) created by
- It's possible for the selected sequence to be completely hidden, so …
- 4:59 PM Ticket #58 (why does mussa take so long to recompute a large nway?) created by
- you can load an nway and it'll show up correctly? but if you set back …
Mar 23, 2006:
- 11:55 AM WikiStart edited by
- (diff)
- 11:53 AM WikiStart edited by
- (diff)
- 11:52 AM WikiStart edited by
- (diff)
- 11:03 AM Ticket #57 (Define analysis is annoying) created by
- When something goes wrong with the define analysis, it catches the …
- 11:02 AM Ticket #56 (Define analysis should include scroll area when SequenceWidget count >= 3) created by
- Define analysis should include scroll area when SequenceWidget count …
- 10:54 AM Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) created by
- I need some way of knowing when what the threshold and window sizes …
- 10:24 AM Ticket #54 (Allow compressing repeat regions) created by
- For MEME Ali compressed reprat regions and replaced them with a small …
Mar 22, 2006:
- 6:13 PM Ticket #53 (Copy an example into the os x dmg) created by
- It'd be useful to include one of the sequence examples when shipping …
- 4:52 PM Ticket #39 (sidebar rendering problems) closed by
- fixed: [138] should fix this.
- 4:13 PM Ticket #41 (Selection box jumps slightly to the right of the rubber band) closed by
- fixed: Fixed by [137] and this was caused by the same problem as ticket:43
- 4:11 PM Ticket #43 (After scrolling a sequence browser window, selection boxes break) closed by
- fixed
- 3:28 PM Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) created by
- The Mussa class when reloaded from an analysis needs to keep track of …
- 2:22 PM Ticket #51 (Copying sequence might be useful) created by
- It'd be nice to be able to copy sequence from a sequence track.
- 2:19 PM Ticket #47 (OS X OpenGL rendering problems) closed by
- fixed: Increasing the line thicknesses in [134] actually worked
- 1:51 PM Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) created by
- Switch to using Qt4.1 resources (automatically compiles resources into …
- 1:50 AM Ticket #49 (QAssistant Mussa Docs) created by
- A tutorial and/or user manual should be made and included within …
- 1:47 AM Ticket #48 (Automate win32 installer build) created by
- Wouldn't it be nice if a new build of the win32 installer could be me …
Mar 21, 2006:
- 10:11 PM WikiStart edited by
- Got Win32 Installer? (diff)
- 9:12 PM Milestone Bionic Mussa completed
- Duplicate the core functionality of Tristan's FLTK mussa.
- 8:55 PM Ticket #5 (Configure a mussa analysis from the Gui) closed by
- fixed: Implementation finished in [135] however it revealed a bug on os x …
- 4:46 PM Ticket #47 (OS X OpenGL rendering problems) created by
- The line widths in the opengl canvas on os x are badly pixelated on …
- 4:44 PM Ticket #45 (recreate os x bless script) closed by
- fixed: Added in [131]
- 3:03 PM MussaglBuild edited by
- (diff)
- 12:22 PM Ticket #46 (link in icons) created by
- OS X can't find the menu icons. It would be best if they were linked …
- 1:28 AM Ticket #45 (recreate os x bless script) created by
- Need to recreate the qt-mac bless script so I can actually …
- 1:23 AM darcs edited by
- (diff)
- 12:49 AM Ticket #14 (Motifs need to be creatable and editable from within the GUI) closed by
- fixed
Mar 20, 2006:
- 5:35 PM Ticket #44 (Computation of reverse compliment colors is buggy) created by
- For both types of links (mussa windows and base pair alignments) the …
- 5:23 PM Ticket #37 (Skateboard Shoes) closed by
- fixed: Computations involving ceil hurt my head... I had ceil(left) - seq_x …
- 4:08 PM Ticket #42 (when resizing you should see more basepairs, not make them bigger.) closed by
- fixed
- 4:07 PM Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) closed by
- fixed
- 4:02 PM Ticket #37 (Skateboard Shoes) reopened by
- 3:19 PM Ticket #37 (Skateboard Shoes) closed by
- fixed: it magically went away.
- 2:13 PM Ticket #43 (After scrolling a sequence browser window, selection boxes break) created by
- The selection box doesn't work correctly when you've scrolled the …
- 1:55 PM Ticket #42 (when resizing you should see more basepairs, not make them bigger.) created by
- When resizing the window instead of "zooming" you should see more base …
- 1:48 PM Ticket #41 (Selection box jumps slightly to the right of the rubber band) created by
- 11:59 AM Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) created by
- The left sequence position indicator shows zero, when it should show …
- 12:55 AM Ticket #39 (sidebar rendering problems) created by
- When there were more than 3 sequences the SequenceBrowserWidget's …
- 12:50 AM Ticket #4 (Aligned sequence view) closed by
- fixed: [119] seems to at least basically work. I think the reverse …
Mar 19, 2006:
- 4:13 PM Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) closed by
- fixed
- 4:13 PM Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) created by
- 1:53 AM Ticket #37 (Skateboard Shoes) created by
- Somewhere there's an off by one error that only affects the leftbase …
- 1:04 AM Ticket #36 (Make zoom widget make sense) closed by
- fixed
Mar 18, 2006:
- 1:02 AM Ticket #36 (Make zoom widget make sense) created by
- The current calculation for the zoom widget is rather odd. It'd be …
Mar 17, 2006:
- 5:11 PM Ticket #35 (Zoom Icon) closed by
- fixed: See changeset:111
- 4:49 PM Ticket #35 (Zoom Icon) created by
- Zoom icon for zoom spin box.
- 4:38 PM Ticket #34 (Unused variable 'max_range' in 'void ...) created by
- qui/seqbrowser/ScrollableSequenceBrowser.cpp: In member function ‘void …
- 4:34 PM Ticket #32 (The trac pages should become the main mussa website) closed by
- fixed: That should be good enough for now... closing ticket.
- 4:32 PM WikiStart edited by
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- 4:25 PM WikiStart edited by
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- 4:11 PM MussaFltk edited by
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- 4:06 PM WikiStart edited by
- links to tickets. (diff)
- 4:03 PM WikiStart edited by
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- 3:49 PM WikiStart edited by
- Adding documentation links. (diff)
- 3:46 PM MussaglBuild edited by
- (diff)
- 3:45 PM MussaglBuild created by
- Basic build information (needs work)
- 3:31 PM darcs edited by
- (diff)
- 3:29 PM darcs edited by
- directions for checking out a copy of mussagl from darcs repository. (diff)
- 3:11 PM darcs edited by
- creating darcs instructions (in progress) (diff)
- 3:07 PM darcs edited by
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- 3:07 PM darcs created by
- 3:02 PM WikiStart edited by
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- 3:00 PM WikiStart edited by
- Adding download information (slowly) (diff)
- 2:54 PM WikiStart edited by
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- 2:48 PM WikiStart edited by
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- 2:43 PM MussaFltk edited by
- Mussa C++/FLTK (diff)
- 2:39 PM MussaFltk created by
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- 2:29 PM MussaProtoype edited by
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- 2:28 PM MussaProtoype edited by
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- 2:26 PM MussaPrototypeCommandline edited by
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- 2:26 PM MussaPrototypeCommandline created by
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- Info on mussa versions (diff)
- 1:49 PM WikiStart edited by
- cartwheel link (diff)
- 1:42 PM WikiStart edited by
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- 1:41 PM transitivity edited by
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- 1:40 PM transitivity created by
- 1:39 PM WikiStart edited by
- Porting useful information from old mussa website to trac wiki (easier … (diff)
Mar 16, 2006:
- 11:26 PM Ticket #24 (Clean up the signals and slots) closed by
- fixed: It could've been more refactored, but the API is fairly …
- 8:58 PM Ticket #33 (changing threshold can cause the UI to freeze) created by
- For larger datasets, the length of time it takes to recompute the nway …
- 7:10 PM Ticket #32 (The trac pages should become the main mussa website) created by
- The trac pages should become the main mussa page. Preferably with …
- 6:02 PM WikiStart edited by
- (diff)
- 6:01 PM OriginalTracStartPage created by
- Moving the trac start page out of the way.
- 6:01 PM WikiStart edited by
- (diff)
- 5:20 PM Ticket #31 (Threshold Widget should use spinboxes) created by
- There are some weaknesses with the slider bar approach for the mussa …
- 3:19 PM Ticket #30 (Allow "leave one out" nway transitive searches) created by
- It would be really useful if a path could still be drawn even if it …
- 3:18 PM Ticket #29 (Connect to Core Match) created by
- Integrate tony's core match algorithm. (Hmm... might also want to …
- 11:14 AM Ticket #28 (Allow user to force a loaded sequence to be reverse complimented.) created by
- When loading a sequence, it'd be nice to be able indicate that it …
- 11:02 AM Ticket #27 (Collect example sequences) created by
- mck5 myogenin (stevens worm region) myf4/myf5 big region test case …
- 10:57 AM Ticket #26 (SubAnalysis mode) created by
- Implement some form of subanalysis mode (last original mussa feature).
- 1:03 AM Ticket #25 (broke motif colors) closed by
- fixed
- 12:46 AM Ticket #25 (broke motif colors) created by
- 12:39 AM Ticket #24 (Clean up the signals and slots) created by
- I don't think I've set up the signals & slots for updating the various …
- 12:37 AM Ticket #3 (View descriptions) closed by
- fixed: It works though the formatting isn't good, and the class hierarchy …
- 12:16 AM Ticket #23 (The threshold widget was broken too) closed by
- fixed
- 12:16 AM Ticket #23 (The threshold widget was broken too) created by
- The change to segment based drawing broke the threshold widget, as …
- 12:12 AM Ticket #22 (default size hint broken) closed by
- fixed
Mar 15, 2006:
- 7:25 PM Ticket #22 (default size hint broken) created by
- When launching mussagl without any analysis, it doesn't pick a …
- 5:57 PM Ticket #16 (figure out how to get selections to work with new segment based drawing) closed by
- fixed: Whenever I close a ticket I seem to immediately open a new one, …
- 5:50 PM Ticket #21 (Implement a better way of handling the GL selection buffer) created by
- The current opengl selection code uses a hard coded buffer size, which …
- 2:08 PM Ticket #19 (I broke the scrollbar too) closed by
- fixed: Calls to setLayout from within the QGLWidget derived class' …
- 12:02 PM Ticket #20 (Toggle Motif Button Implementation) created by
- Make motifs go away... we don't like them... well some times we do.
- 11:23 AM Ticket #19 (I broke the scrollbar too) created by
- The new draw code also broke the scroll bar. And is there a chance to …
- 2:37 AM Ticket #18 (segments should indicate if they're both forward and reveresed) created by
- a segment should track forward and reverse compliment separately, as …
- 2:09 AM Ticket #17 (Allow user to specify an offset for base pair location label) created by
- In order to make it easer to map some random fasta file back to the …
- 2:00 AM Ticket #16 (figure out how to get selections to work with new segment based drawing) created by
- Though the new segment based drawing is faster it does make selection …
- 1:58 AM Ticket #2 (Connection view) closed by
- fixed
Mar 14, 2006:
- 2:26 PM Ticket #15 (Unify build system) created by
- It'd be nice if I didn't have to deal with both the qmake-qt4 derived …
- 12:16 AM Ticket #14 (Motifs need to be creatable and editable from within the GUI) created by
- I hacked in loading motifs from a file, but there really should be …
- 12:11 AM Ticket #12 (modify motifs attached to an analysis) closed by
- fixed: Splattering done. User interface missing.
- 12:10 AM Ticket #13 (AnnotationColor mapper needs a user interface) created by
- One might imagine that users would actually like to edit colors by …
- 12:05 AM Ticket #1 (Annotation color mapper) closed by
- fixed: The colors are tracked, but there's no UI. I'm going to close this …
Note:
See TracTimeline
for information about the timeline view.
