Timeline
10/13/2006:
- 18:53 Milestone Few Small Repairs completed
- (Ok so it was more than a few small repairs) This was to implement …
- 18:51 Ticket #150 (Example data for 1.0 release) closed by
- fixed
- 18:26 Ticket #163 (Motif loading doesn't work with release builds) created by
- For some reason motifs aren't loading any more.
- 18:15 Ticket #156 (Mussa manual - meta ticket) closed by
- invalid: No longer needed since we have a new milestone for 1.0 documentation.
- 18:14 Ticket #162 (Mussa manual: Update major new features section) created by
- Mussa manual: Update major new features section
- 18:13 Ticket #161 (Add link to smn1 example data (since the UCSC tutorial is based on it)) created by
- Add link to smn1 example data (since the UCSC tutorial is based on it)
- 18:09 Ticket #151 (Crash is possible when creating a subanalysis smaller than the window) closed by
- fixed
- 17:33 Ticket #160 (error: default argument for parameter of type ‘MussaRef’ has type ‘int’) closed by
- fixed: Fixed by changeset:422.
- 17:30 Ticket #160 (error: default argument for parameter of type ‘MussaRef’ has type ‘int’) created by
- Mussa refused to build in Ubuntu with gcc 4.0.3. Error: […] gcc …
- 17:27 Ticket #153 (Allow users to specify the file load file mask) closed by
- fixed: Closed by changeset:422
- 17:24 Ticket #159 (Create track macro to display changelog with build numbers) created by
- The change log is too long to display in the Manual. The Manual should …
- 17:14 Ticket #131 (When closing an analysis window, cancel doesn't prevent the close) closed by
- worksforme: At least on OS X and Linux there are no problems, perhaps windows has …
- 16:53 Ticket #158 (When unable to parse a fasta file report its name) created by
- It would also be useful to report what characters it failed on.
- 16:44 OverlappingWindows edited by
- (diff)
- 16:44 OverlappingWindows edited by
- (diff)
- 16:42 OverlappingWindows edited by
- (diff)
- 16:34 OverlappingWindows edited by
- (diff)
- 16:22 OverlappingWindows created by
- 16:13 Ticket #157 (Mussa manual: document 'save to image' feature) created by
- Mussa manual needs the 'save to image' feature documented.
- 16:08 Ticket #156 (Mussa manual - meta ticket) created by
- Tasks for updating Mussa Manual: * #137 * #152 * #153 * #157
- 15:17 Ticket #96 (Save to image broken) closed by
- fixed: Fixed by changeset:419.
- 13:51 Ticket #49 (QAssistant Mussa Docs) closed by
- fixed: Brandon has been working on a tutorial. It's not done, but since we …
- 13:49 Ticket #155 (Include a simple repeat filter) created by
- It would be nice if mussa had an option to perform some type of repeat …
10/12/2006:
- 22:54 Ticket #133 (Should be able to save motifs) closed by
- fixed: Patche [404] added the lowest level save motif code [408] connected …
- 22:23 Ticket #154 (off by one error when drawing segments) closed by
- fixed: [411] fixed it (and widened the glyphs a little)
- 22:22 Ticket #154 (off by one error when drawing segments) created by
- I think [397] introduced an error where line segments were being drawn …
- 16:00 Ticket #120 (Windows doesn't have python installed by default) closed by
- fixed
- 15:48 Ticket #153 (Allow users to specify the file load file mask) created by
- Currently its somewhat mysterious what file masks we allow for mussa …
- 15:18 Ticket #152 (Update mussa_manual.adp to latest tutorial version) created by
- The QtAssistant .adp file for the mussa_manual needs to be updated to …
- 02:04 Ticket #151 (Crash is possible when creating a subanalysis smaller than the window) created by
10/11/2006:
- 16:15 Ticket #150 (Example data for 1.0 release) created by
- After talking to Barbara, since our release is timed with Libera's …
- 15:57 Ticket #149 (Handle " in motif names) closed by
- fixed: [405] adds validation code to prevent users from entering bad data.
- 15:56 Ticket #126 (Figure out how to get the spirit parsers to report parse errors) closed by
- fixed: [403] fixes this. Admittedly my count variable in my functor structs …
- 14:41 Ticket #149 (Handle " in motif names) created by
- I need to do something with " in a motif name, as if its left in it'll …
10/10/2006:
- 17:55 Ticket #148 (setup_analysis dialog should make sure that the threshold is not ...) closed by
- fixed: fixed by [402] by using spinboxes instead of qlineedits.
- 17:16 ExampleData edited by
- (diff)
- 17:16 ExampleData edited by
- (diff)
- 17:09 Ticket #147 (Sometimes the width of a quadrallateral is too small) closed by
- fixed: [400] fixed this. yay pixel width computations.
- 16:35 Ticket #146 (Win32: Create new analysis mystery crash) closed by
- fixed: Surprisingly, changeset:398 fixed this problem... Apparently the motif …
- 16:29 Ticket #148 (setup_analysis dialog should make sure that the threshold is not ...) created by
- 16:25 Ticket #139 (Edit motif window looses motif information when closed) closed by
- fixed: fixed [399]
- 15:46 Ticket #147 (Sometimes the width of a quadrallateral is too small) created by
- On some larger views the quads used for when widths are greater than 1 …
- 15:45 Ticket #134 (Width of seqcomp match line is wrong) closed by
- fixed: [397] uses line drawing code when the length of a segment is <= 1.
- 15:43 Ticket #144 (IUPAC codes are destroyed by the sequence normalization code) closed by
- fixed: [398] added general sequence alphabet handling. (Using a subset of …
- 13:33 ExampleData edited by
- (diff)
- 13:32 ExampleData edited by
- (diff)
- 13:27 ExampleData edited by
- (diff)
- 13:27 ExampleData edited by
- (diff)
- 13:26 ExampleData edited by
- (diff)
10/06/2006:
- 16:53 ExampleData edited by
- (diff)
- 16:52 ExampleData edited by
- (diff)
- 16:44 ExampleData edited by
- Link to information about SMN1 & SMN2 at OMIM. (diff)
- 15:27 Ticket #146 (Win32: Create new analysis mystery crash) created by
- I discovered that when you create a new analysis with Mussa in windows …
- 10:46 ExampleData edited by
- (diff)
- 10:44 ExampleData edited by
- (diff)
- 10:41 ExampleData edited by
- Added zip of example data. (diff)
- 10:38 ExampleData created by
- Adding smn1 example data
- 10:10 WikiStart edited by
- Adding a page for posting example data. (diff)
10/05/2006:
- 00:50 Ticket #103 (Motifs need a name field) closed by
- fixed: I think this works now. Motifs are sequences, and the name is set. …
10/04/2006:
- 15:20 Ticket #10 (Integrate motifs with annotations) closed by
- duplicate: The move to turn motifs and annotations into specializations of …
- 15:11 Ticket #145 (Use titus' paircomp and motility) created by
- One of my concerns is how to pull his code into mussa in a way that is …
- 15:02 Ticket #143 (add command line option to annotate an analysis with a motif file.) closed by
- fixed: [395] added the command line option.
- 10:09 Ticket #144 (IUPAC codes are destroyed by the sequence normalization code) created by
- when searching for a motif the sequence class feeds things through a …
10/03/2006:
- 18:17 Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) closed by
- fixed: [388] implements this.
- 18:17 Ticket #140 (Load Motifs doesn't do anything) closed by
- fixed: [394] and [393] fix this. The parser wasn't working and then the …
- 18:16 Ticket #138 (Sequence view window needs a title) closed by
- fixed: [391] implements this and also fills in the other window titles.
- 15:19 Ticket #143 (add command line option to annotate an analysis with a motif file.) created by
- since you can load an analysis and create a new analysis from the …
10/02/2006:
- 14:56 Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) created by
- 14:55 Ticket #141 (Vector output) created by
- It'd be really nice if we could generate vector output, both for …
- 14:54 Ticket #140 (Load Motifs doesn't do anything) created by
- It appears that the Load Motif menu option either doesn't load motifs …
- 14:46 Ticket #139 (Edit motif window looses motif information when closed) created by
- It really should reload the motif information from the analysis when …
09/29/2006:
09/28/2006:
09/27/2006:
- 17:38 Ticket #137 (Document why Base pair match lines on the sequence view don't always ...) created by
- in cases where there's a match between the first and second sequence …
- 00:22 Ticket #136 (allow absolute positioning) created by
- I think i can allow absolute positioning if I made the "location" base …
09/25/2006:
- 10:14 Ticket #135 (Win32: Save as not working... causes crash.) closed by
- fixed: Fixed in changeset:381. boost::filesystem needed to be told to use …
09/22/2006:
- 16:30 Ticket #135 (Win32: Save as not working... causes crash.) created by
- On windows the Save As feature causes a crash.
09/21/2006:
- 14:26 Ticket #134 (Width of seqcomp match line is wrong) created by
- It might be useful if the seqcomp match lines being drawn were …
- 13:23 OSXUniversalDependencies edited by
- (diff)
09/19/2006:
- 16:49 Ticket #133 (Should be able to save motifs) created by
- It looks like the best path is that when saving an analysis it'll also …
09/18/2006:
- 16:24 Ticket #125 (autodetect if python needs -lutil) closed by
- fixed: Fixed with [375] and [376] Pretty nice of distutils to provide a way …
09/15/2006:
- 17:14 Ticket #105 (Load Analysis should spawn a new window) closed by
- fixed: Technically the create from mupa file should open a new window too, …
- 17:09 Ticket #132 (Make open saved analysis open a new window) closed by
- duplicate: duplicate of ticket:105
- 17:02 Ticket #132 (Make open saved analysis open a new window) created by
- I can make open saved analysis open a new window if the window isn't …
- 15:55 Ticket #131 (When closing an analysis window, cancel doesn't prevent the close) created by
- Brandon tried to close a subanalysis window that hadn't been saved. It …
- 15:34 Ticket #130 (Save is relative to the current directory) closed by
- fixed: implemented [370] though I started [372] because I forgot that I'd …
- 11:52 Ticket #130 (Save is relative to the current directory) created by
- Mussa doesn't save the path it was loaded from, so when save a …
- 11:11 Ticket #129 (Subseq doesn't support trees correctly) closed by
- fixed: Implemented [367]
09/14/2006:
- 17:47 Ticket #129 (Subseq doesn't support trees correctly) created by
- Currently subseq's start/count is always relative to the seq_string, …
- 14:12 Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) closed by
- fixed: fixed in [363]
- 13:12 Ticket #128 (the editable sequence name only shows the end of long names.) closed by
- fixed: fixed [362] ( I think I spent more time on bug tracking than bug …
- 13:06 Ticket #128 (the editable sequence name only shows the end of long names.) created by
- Not terribly important but a long name like "tetraodon" only shows the …
- 13:05 Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) created by
- The layout doesn't put the first description block at the very top …
09/13/2006:
- 18:38 Ticket #126 (Figure out how to get the spirit parsers to report parse errors) created by
- The annotation parser and the motif parser are now both using the …
- 18:36 Ticket #116 (Perhaps the motif file should have a name field.) closed by
- fixed: implmented in [361] with the caveat that my spirit parsers don't throw …
- 15:52 Ticket #73 (Performance problems doing analysis) closed by
- invalid: This ticket was mostly gathering information about what influences …
- 15:36 Ticket #125 (autodetect if python needs -lutil) created by
- On Fedora core the version of python requires being linked with …
- 15:35 Ticket #124 (report patch version) created by
- Brandon suggested that it'd be useful for mussa to have some version …
- 15:33 Ticket #123 (Allow hiding sidebars) created by
- Tristan complained briefly about the sidebars taking up too much …
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