Timeline
Oct 16, 2006:
- 11:57 PM Ticket #180 (shipit script on os x needs to validate the archive) closed by
- fixed: [429] provides the more thorough osxdist.py script. At some point its …
- 11:56 PM Ticket #184 (Dont link against X11 on OS X) closed by
- fixed: Fixed [428] Though why did the USE_QT stuff add in X11 in the python …
- 11:55 PM Ticket #184 (Dont link against X11 on OS X) created by
- 11:54 PM Ticket #183 (Seqcomp is case sensitive) closed by
- fixed: Fixed in [430]
- 11:49 PM Ticket #183 (Seqcomp is case sensitive) created by
- If you load a sequences of different case they seqcomp won't work …
- 11:02 PM Ticket #182 (Mussa views need vertical scrolls) created by
- So if you're comparing enough sequences mussa will run out of vertical …
- 4:39 PM Ticket #181 (Update 'Load a mussa parameter file' section) created by
- The 'Load a mussa parameter file' section is out of date. Both the …
- 1:50 PM Ticket #180 (shipit script on os x needs to validate the archive) created by
- Make sure that there's no references to "/usr/local" or X11 libraries.
- 12:04 PM Ticket #179 (Add a section on "File > New Mussa Window" feature.) created by
- Add a section on "File > New Mussa Window" feature.
- 12:02 PM Ticket #178 (Update all screenshots to latest version of Mussa.) created by
- Update all screenshots to latest version of Mussa, since we are ready …
- 11:59 AM Ticket #171 (Remove the "Motif Toggle" button from manual.) closed by
- fixed: Completed in changeset:427.
- 11:58 AM Ticket #173 (Update "Sequence Information Bar" section, as it has changed in latest ...) closed by
- fixed: Completed in changeset:427.
- 11:58 AM Ticket #172 (Update "Dynamic Threshold" section as the widget has changed.) closed by
- fixed: Completed in changeset:427.
- 11:58 AM Ticket #166 (Update Mussa summary screenshot to latest version) closed by
- fixed: Completed in changeset:427.
- 11:21 AM Ticket #177 (Confirm description of blue conservation tracks is correct.) created by
- Confirm description of blue conservation tracks is correct and improve …
- 10:43 AM Ticket #176 (Document 'Save Analysis' and 'Save Analysis As' features.) created by
- Document 'Save Analysis' and 'Save Analysis As' features.
- 10:42 AM Ticket #175 (Document new 'save motifs' feature.) created by
- Document new 'save motifs' feature.
- 10:40 AM Ticket #174 (Confirm file formats are documented and correct.) created by
- Confirm file formats are documented and correct.
- 10:39 AM Ticket #173 (Update "Sequence Information Bar" section, as it has changed in latest ...) created by
- Update "Sequence Information Bar" section, as it has changed in latest …
- 10:38 AM Ticket #172 (Update "Dynamic Threshold" section as the widget has changed.) created by
- Update "Dynamic Threshold" section as the widget has changed.
- 10:37 AM Ticket #171 (Remove the "Motif Toggle" button from manual.) created by
- Remove the "Motif Toggle" button from manual as it has been removed …
- 10:35 AM Ticket #170 (After implementing ticket:164, update 'Load Mupa' section to link to ...) created by
- After implementing ticket:164, update 'Load Mupa' section to link to …
- 10:33 AM Ticket #169 (Update "New Analysis" section as the Dialog box has changed.) created by
- Update "New Analysis" section as the Dialog box has changed.
- 10:26 AM Ticket #168 (Mussa manual: Update Mac OS X install instructions) created by
- 10:25 AM Ticket #167 (Add an "Understanding Mussa" section to manual.) created by
- When ever there is a confusing or interesting detail one should know …
- 10:13 AM Ticket #166 (Update Mussa summary screenshot to latest version) created by
- Update Mussa summary screenshot to latest version.
- 10:09 AM Ticket #161 (Add link to smn1 example data (since the UCSC tutorial is based on it)) closed by
- fixed: Added in changeset:426.
- 10:03 AM Ticket #157 (Mussa manual: document 'save to image' feature) closed by
- fixed: Added in changeset:425.
- 10:01 AM Ticket #165 (Include a section on creating a motif list file using the smn1 data.) created by
- Include a section on creating a motif list file using the smn1 data.
- 10:01 AM Ticket #164 (Include a section on creating a .mupa file using the smn1 data.) created by
- Include a section on creating a .mupa file using the smn1 data.
Oct 15, 2006:
Oct 13, 2006:
- 6:53 PM Milestone Few Small Repairs completed
- (Ok so it was more than a few small repairs) This was to implement …
- 6:51 PM Ticket #150 (Example data for 1.0 release) closed by
- fixed
- 6:26 PM Ticket #163 (Motif loading doesn't work with release builds) created by
- For some reason motifs aren't loading any more.
- 6:15 PM Ticket #156 (Mussa manual - meta ticket) closed by
- invalid: No longer needed since we have a new milestone for 1.0 documentation.
- 6:14 PM Ticket #162 (Mussa manual: Update major new features section) created by
- Mussa manual: Update major new features section
- 6:13 PM Ticket #161 (Add link to smn1 example data (since the UCSC tutorial is based on it)) created by
- Add link to smn1 example data (since the UCSC tutorial is based on it)
- 6:09 PM Ticket #151 (Crash is possible when creating a subanalysis smaller than the window) closed by
- fixed
- 5:33 PM Ticket #160 (error: default argument for parameter of type ‘MussaRef’ has type ‘int’) closed by
- fixed: Fixed by changeset:422.
- 5:30 PM Ticket #160 (error: default argument for parameter of type ‘MussaRef’ has type ‘int’) created by
- Mussa refused to build in Ubuntu with gcc 4.0.3. Error: […] gcc …
- 5:27 PM Ticket #153 (Allow users to specify the file load file mask) closed by
- fixed: Closed by changeset:422
- 5:24 PM Ticket #159 (Create track macro to display changelog with build numbers) created by
- The change log is too long to display in the Manual. The Manual should …
- 5:14 PM Ticket #131 (When closing an analysis window, cancel doesn't prevent the close) closed by
- worksforme: At least on OS X and Linux there are no problems, perhaps windows has …
- 4:53 PM Ticket #158 (When unable to parse a fasta file report its name) created by
- It would also be useful to report what characters it failed on.
- 4:44 PM OverlappingWindows edited by
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- 4:44 PM OverlappingWindows edited by
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- 4:42 PM OverlappingWindows edited by
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- 4:34 PM OverlappingWindows edited by
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- 4:22 PM OverlappingWindows created by
- 4:13 PM Ticket #157 (Mussa manual: document 'save to image' feature) created by
- Mussa manual needs the 'save to image' feature documented.
- 4:08 PM Ticket #156 (Mussa manual - meta ticket) created by
- Tasks for updating Mussa Manual: * #137 * #152 * #153 * #157
- 3:17 PM Ticket #96 (Save to image broken) closed by
- fixed: Fixed by changeset:419.
- 1:51 PM Ticket #49 (QAssistant Mussa Docs) closed by
- fixed: Brandon has been working on a tutorial. It's not done, but since we …
- 1:49 PM Ticket #155 (Include a simple repeat filter) created by
- It would be nice if mussa had an option to perform some type of repeat …
Oct 12, 2006:
- 10:54 PM Ticket #133 (Should be able to save motifs) closed by
- fixed: Patche [404] added the lowest level save motif code [408] connected …
- 10:23 PM Ticket #154 (off by one error when drawing segments) closed by
- fixed: [411] fixed it (and widened the glyphs a little)
- 10:22 PM Ticket #154 (off by one error when drawing segments) created by
- I think [397] introduced an error where line segments were being drawn …
- 4:00 PM Ticket #120 (Windows doesn't have python installed by default) closed by
- fixed
- 3:48 PM Ticket #153 (Allow users to specify the file load file mask) created by
- Currently its somewhat mysterious what file masks we allow for mussa …
- 3:18 PM Ticket #152 (Update mussa_manual.adp to latest tutorial version) created by
- The QtAssistant .adp file for the mussa_manual needs to be updated to …
- 2:04 AM Ticket #151 (Crash is possible when creating a subanalysis smaller than the window) created by
Oct 11, 2006:
- 4:15 PM Ticket #150 (Example data for 1.0 release) created by
- After talking to Barbara, since our release is timed with Libera's …
- 3:57 PM Ticket #149 (Handle " in motif names) closed by
- fixed: [405] adds validation code to prevent users from entering bad data.
- 3:56 PM Ticket #126 (Figure out how to get the spirit parsers to report parse errors) closed by
- fixed: [403] fixes this. Admittedly my count variable in my functor structs …
- 2:41 PM Ticket #149 (Handle " in motif names) created by
- I need to do something with " in a motif name, as if its left in it'll …
Oct 10, 2006:
- 5:55 PM Ticket #148 (setup_analysis dialog should make sure that the threshold is not ...) closed by
- fixed: fixed by [402] by using spinboxes instead of qlineedits.
- 5:16 PM ExampleData edited by
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- 5:16 PM ExampleData edited by
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- 5:09 PM Ticket #147 (Sometimes the width of a quadrallateral is too small) closed by
- fixed: [400] fixed this. yay pixel width computations.
- 4:35 PM Ticket #146 (Win32: Create new analysis mystery crash) closed by
- fixed: Surprisingly, changeset:398 fixed this problem... Apparently the motif …
- 4:29 PM Ticket #148 (setup_analysis dialog should make sure that the threshold is not ...) created by
- 4:25 PM Ticket #139 (Edit motif window looses motif information when closed) closed by
- fixed: fixed [399]
- 3:46 PM Ticket #147 (Sometimes the width of a quadrallateral is too small) created by
- On some larger views the quads used for when widths are greater than 1 …
- 3:45 PM Ticket #134 (Width of seqcomp match line is wrong) closed by
- fixed: [397] uses line drawing code when the length of a segment is <= 1.
- 3:43 PM Ticket #144 (IUPAC codes are destroyed by the sequence normalization code) closed by
- fixed: [398] added general sequence alphabet handling. (Using a subset of …
- 1:33 PM ExampleData edited by
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- 1:32 PM ExampleData edited by
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- 1:27 PM ExampleData edited by
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- 1:27 PM ExampleData edited by
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- 1:26 PM ExampleData edited by
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Oct 6, 2006:
- 4:53 PM ExampleData edited by
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- 4:52 PM ExampleData edited by
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- 4:44 PM ExampleData edited by
- Link to information about SMN1 & SMN2 at OMIM. (diff)
- 3:27 PM Ticket #146 (Win32: Create new analysis mystery crash) created by
- I discovered that when you create a new analysis with Mussa in windows …
- 10:46 AM ExampleData edited by
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- 10:44 AM ExampleData edited by
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- 10:41 AM ExampleData edited by
- Added zip of example data. (diff)
- 10:38 AM ExampleData created by
- Adding smn1 example data
- 10:10 AM WikiStart edited by
- Adding a page for posting example data. (diff)
Oct 5, 2006:
- 12:50 AM Ticket #103 (Motifs need a name field) closed by
- fixed: I think this works now. Motifs are sequences, and the name is set. …
Oct 4, 2006:
- 3:20 PM Ticket #10 (Integrate motifs with annotations) closed by
- duplicate: The move to turn motifs and annotations into specializations of …
- 3:11 PM Ticket #145 (Use titus' paircomp and motility) created by
- One of my concerns is how to pull his code into mussa in a way that is …
- 3:02 PM Ticket #143 (add command line option to annotate an analysis with a motif file.) closed by
- fixed: [395] added the command line option.
- 10:09 AM Ticket #144 (IUPAC codes are destroyed by the sequence normalization code) created by
- when searching for a motif the sequence class feeds things through a …
Oct 3, 2006:
- 6:17 PM Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) closed by
- fixed: [388] implements this.
- 6:17 PM Ticket #140 (Load Motifs doesn't do anything) closed by
- fixed: [394] and [393] fix this. The parser wasn't working and then the …
- 6:16 PM Ticket #138 (Sequence view window needs a title) closed by
- fixed: [391] implements this and also fills in the other window titles.
- 3:19 PM Ticket #143 (add command line option to annotate an analysis with a motif file.) created by
- since you can load an analysis and create a new analysis from the …
Oct 2, 2006:
- 2:56 PM Ticket #142 (It'd be really useful to trigger a subanalysis from an aligned ...) created by
- 2:55 PM Ticket #141 (Vector output) created by
- It'd be really nice if we could generate vector output, both for …
- 2:54 PM Ticket #140 (Load Motifs doesn't do anything) created by
- It appears that the Load Motif menu option either doesn't load motifs …
- 2:46 PM Ticket #139 (Edit motif window looses motif information when closed) created by
- It really should reload the motif information from the analysis when …
Sep 29, 2006:
Sep 28, 2006:
Sep 27, 2006:
- 5:38 PM Ticket #137 (Document why Base pair match lines on the sequence view don't always ...) created by
- in cases where there's a match between the first and second sequence …
- 12:22 AM Ticket #136 (allow absolute positioning) created by
- I think i can allow absolute positioning if I made the "location" base …
Sep 25, 2006:
- 10:14 AM Ticket #135 (Win32: Save as not working... causes crash.) closed by
- fixed: Fixed in changeset:381. boost::filesystem needed to be told to use …
Sep 22, 2006:
- 4:30 PM Ticket #135 (Win32: Save as not working... causes crash.) created by
- On windows the Save As feature causes a crash.
Sep 21, 2006:
- 2:26 PM Ticket #134 (Width of seqcomp match line is wrong) created by
- It might be useful if the seqcomp match lines being drawn were …
- 1:23 PM OSXUniversalDependencies edited by
- (diff)
Sep 19, 2006:
- 4:49 PM Ticket #133 (Should be able to save motifs) created by
- It looks like the best path is that when saving an analysis it'll also …
Sep 18, 2006:
- 4:24 PM Ticket #125 (autodetect if python needs -lutil) closed by
- fixed: Fixed with [375] and [376] Pretty nice of distutils to provide a way …
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