{6} All Tickets By Milestone (Including closed) (266 matches)

A more complex example to show how to make advanced reports.

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unit tests (5 matches)

Ticket Summary Component Status Resolution Version Type Priority Owner Modified
#82 Unit test python API Qt Gui new enhancement critical diane 10/20/2006
#106 Figure out how to test copySelectedTracks core new enhancement major diane 10/20/2006
#203 Unit test the code that generates all the mussa filename core new enhancement major diane 10/24/2006
#208 the alg unittest executable needs to be broken up core closed fixed enhancement major diane 01/04/2007
#207 Reenable GUI tests Qt Gui closed fixed defect major diane 10/24/2006

release_1.2 (12 matches)

#30 Allow "leave one out" nway transitive searches core new enhancement blocker diane 10/20/2006
#205 Add button for autofitting sequence to window Qt Gui new enhancement major diane 10/20/2006
#218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog Qt Gui new enhancement major diane 10/27/2006
#228 Allow more vertical collapse of description widgets Qt Gui new enhancement major diane 11/22/2006
#241 One of the annotations needed is to show where the start of the gene is Qt Gui new enhancement major diane 11/27/2006
#123 Allow hiding sidebars Qt Gui new enhancement minor diane 10/20/2006
#124 report patch version core new enhancement minor diane 10/20/2006
#230 shipit script should ship source distribution too. other new enhancement minor diane 10/27/2006
#262 ThresholdWidget.reset() SIGNAL/SLOTS issue. Qt Gui new defect minor diane 04/19/2007
#193 Changing a species name doesn't set dirty flag. Qt Gui new 1.0 enhancement trivial diane 10/20/2006
#212 ESC key should by bound to 'deselect' current selection. Qt Gui closed fixed enhancement trivial diane 04/16/2007
#243 Change mussa track to white boxes with Ns highlighted in black Qt Gui closed fixed enhancement major diane 04/11/2007

release_1.1 (35 matches)

#249 darcs tag mussa_1.1.0 Qt Gui new defect critical diane 02/22/2007
#263 Compile warnings must die! Qt Gui new defect critical diane 04/19/2007
#248 Test latest build on all platforms Qt Gui new task major diane 02/22/2007
#266 Sub-analysis drawing bug (see attached screenshots) Qt Gui new defect major diane 07/16/2007
#267 Sequence View soft threshold control non-responsive Qt Gui new defect major diane 07/17/2007
#265 Mussa annotation file didn't work if the last sequence wasn't terminated by a newline core closed fixed defect major diane 06/22/2007
#259 New Annotations hide the sequence when you zoom to sequence view Qt Gui closed fixed defect critical diane 05/02/2007
#252 Make scroll wheel work Qt Gui closed fixed enhancement major king 04/23/2007
#257 Saving analysis saves at current threshold Qt Gui closed fixed defect major king 04/19/2007
#240 When there are no matches, mussa doesn't seem to display anything Qt Gui closed fixed defect minor king 04/19/2007
#261 Mussa mupa comment character required a space core closed fixed defect minor diane 04/19/2007
#260 Mupa parser is cranky on windows files core closed fixed defect major diane 04/19/2007
#256 Assertion failed Qt Gui closed fixed defect major diane 04/03/2007
#255 Even telling cmake to use python2.3 mussa still builds against 2.5 python interface closed fixed defect major diane 03/13/2007
#254 Sub-analysis failing to draw paths on init Qt Gui closed fixed defect minor king 03/02/2007
#251 Save to image crash Qt Gui closed fixed defect major king 03/02/2007
#250 Cmake build failure: /usr/bin/ld: cannot find -loptimized Qt Gui closed fixed defect blocker diane 02/23/2007
#247 Increase version number to 1.1.0 core closed fixed task blocker diane 02/23/2007
#246 Add "What's this?" documentation to as many elements of the GUI as possible. Qt Gui closed fixed enhancement major king 02/22/2007
#195 Disable motif and closing motif editor causes loss of motifs. Qt Gui closed fixed 1.0 defect critical diane 02/20/2007
#239 Report error when trying to load a directory as an annotation. core closed fixed defect major diane 02/20/2007
#244 len(mussa.paths()) returns number of tracks, not the number of paths found python interface closed fixed defect major diane 12/14/2006
#206 We need some way of indicating Ns Qt Gui closed duplicate enhancement critical diane 12/13/2006
#226 QtTest is now a framework other closed fixed defect major diane 12/13/2006
#111 Set zero/alignment point for a sequence Qt Gui closed fixed enhancement critical diane 11/22/2006
#237 Crashing with invalid file name Qt Gui closed fixed defect major diane 11/17/2006
#236 Error parsing annotation file should also include the filename in the exception. core closed fixed enhancement major diane 10/30/2006
#158 When unable to parse a fasta file report its name Qt Gui closed fixed enhancement critical diane 10/30/2006
#210 see about removing some of the wasted border width on the sidebars Qt Gui closed wontfix enhancement trivial diane 10/30/2006
#182 Mussa views need vertical scrolls Qt Gui closed fixed enhancement critical diane 10/27/2006
#233 when first displaying mussa the tracks aren't sized to the available viewport on os x Qt Gui closed fixed defect major diane 10/27/2006
#217 Use QtDesktopServices for openURL Qt Gui closed fixed enhancement major diane 10/27/2006
#194 use window feedback to show that there are unsaved changes Qt Gui closed fixed 1.0 enhancement trivial diane 10/27/2006
#215 You should be able to paste into the motif editor Qt Gui closed fixed enhancement critical diane 10/26/2006
#211 Report how many basepairs are copied Qt Gui closed fixed enhancement major diane 10/26/2006

release_1.0 (15 matches)

#229 Package Everything for 1.0 other closed fixed task major diane 11/22/2006
#235 set version to 1.0 in version.h other closed fixed task major diane 11/01/2006
#223 Set the Window Icon to be the Mussa icon Qt Gui closed fixed 1.0 enhancement trivial king 10/26/2006
#216 subanalysis doesn't call setSoftThreshold to after finishing analysis Qt Gui closed fixed defect major diane 10/23/2006
#199 After [451] I noticed that subanalyses didn't seem to have motif information Qt Gui closed fixed defect major diane 10/19/2006
#200 Pushing the threshold change button too fast will cause mussa to crash Qt Gui closed fixed defect major diane 10/19/2006
#163 Motif loading doesn't work with release builds Qt Gui closed fixed defect major diane 10/19/2006
#197 the subanalysis when using the original mck example draws lines off the sequence. Qt Gui closed fixed defect major diane 10/18/2006
#192 Steven can't save with mussa Qt Gui closed fixed defect major diane 10/17/2006
#188 Save motifs action does not append .mtl or .txt by default Qt Gui closed fixed 1.0 enhancement minor diane 10/17/2006
#187 Editing a motif does not set dirty flag. Qt Gui closed fixed 1.0 defect minor diane 10/17/2006
#186 Motif dialog on load existing motifs behavior needs update. Qt Gui closed fixed 1.0 enhancement minor diane 10/17/2006
#180 shipit script on os x needs to validate the archive other closed fixed defect major diane 10/16/2006
#184 Dont link against X11 on OS X other closed fixed defect major diane 10/16/2006
#183 Seqcomp is case sensitive core closed fixed defect major diane 10/16/2006

from __future__ import magic (13 matches)

#81 Storing and searching metadata Qt Gui new enhancement blocker diane 10/13/2006
#8 Per species thresholds core new enhancement major diane 10/04/2006
#28 Allow user to force a loaded sequence to be reverse complimented. Qt Gui new enhancement major diane 10/04/2006
#80 Difference between analyses Qt Gui new enhancement major diane 10/13/2006
#87 Autodetect threshold Qt Gui new enhancement major diane 10/13/2006
#219 Reordering sequences in an analysis would be really nice Qt Gui new enhancement major diane 10/24/2006
#222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure Qt Gui new enhancement major diane 10/25/2006
#238 Set left offset graphically Qt Gui new enhancement major diane 11/22/2006
#245 Implement back_inserter for sequence type core new enhancement major diane 01/04/2007
#18 segments should indicate if they're both forward and reveresed core new enhancement minor diane 10/13/2006
#54 Allow compressing repeat regions Qt Gui new enhancement minor diane 10/13/2006
#112 Sequence logo Qt Gui new enhancement minor diane 10/04/2006
#155 Include a simple repeat filter core new enhancement minor diane 10/13/2006

from __future__ import docs (2 matches)

#159 Create track macro to display changelog with build numbers other new 1.0 task minor king 10/27/2006
#165 Include a section on creating a motif list file using the smn1 data. other new 1.0 task minor king 10/27/2006

document_1.1 (8 matches)

#198 Document the multi add to sub-analysis feature. Qt Gui new 1.0 task major king 10/27/2006
#221 Discover/document effect of ordering species on analysis run times. core new 1.0 task major king 10/27/2006
#232 Document the report bp copied number. Qt Gui new task major king 10/27/2006
#234 Document * in title when there are unsaved changes Qt Gui new task major king 10/27/2006
#242 make really sure people understand how repeatmasking prevents motifs from being shown. Qt Gui new defect major diane 11/27/2006
#258 document new escape to clear selection Qt Gui new task major king 04/16/2007
#264 Document sequence properties other new task major king 04/20/2007
#231 Document copy and paste into motif editor now functional. Qt Gui new task minor king 10/27/2006

document_1.0 (10 matches)

#177 Confirm description of blue conservation tracks is correct. other closed fixed 1.0 task minor diane 02/14/2007
#174 Confirm file formats are documented and correct. other closed fixed 1.0 task major diane 02/14/2007
#152 Update mussa_manual.adp to latest tutorial version other closed fixed task minor king 11/01/2006
#213 Document how to deselect tracks/paths Qt Gui closed fixed 1.0 task minor king 10/27/2006
#170 After implementing ticket:164, update 'Load Mupa' section to link to SMN1 example .mupa. other closed fixed 1.0 task major king 10/27/2006
#225 Document mussagl command line option Qt Gui closed fixed 1.0 task minor king 10/27/2006
#162 Mussa manual: Update major new features section other closed fixed 1.0 task minor king 10/27/2006
#168 Mussa manual: Update Mac OS X install instructions other closed fixed 1.0 task major king 10/27/2006
#214 Document why sub-analysis exists other closed fixed 1.0 enhancement minor king 10/27/2006
#137 Document why Base pair match lines on the sequence view don't always connect all the sequences other closed fixed task trivial diane 10/27/2006
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