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16:49 Ticket #133 (Should be able to save motifs) created by diane: It looks like the best path is that when saving an analysis it'll also …

16:24 Ticket #125 (autodetect if python needs -lutil) closed by diane: fixed: Fixed with [375] and [376] Pretty nice of distutils to provide a way …

17:14 Ticket #105 (Load Analysis should spawn a new window) closed by diane: fixed: Technically the create from mupa file should open a new window too, …
17:09 Ticket #132 (Make open saved analysis open a new window) closed by diane: duplicate: duplicate of ticket:105
17:02 Ticket #132 (Make open saved analysis open a new window) created by diane: I can make open saved analysis open a new window if the window isn't …
15:55 Ticket #131 (When closing an analysis window, cancel doesn't prevent the close) created by diane: Brandon tried to close a subanalysis window that hadn't been saved. It …
15:34 Ticket #130 (Save is relative to the current directory) closed by diane: fixed: implemented [370] though I started [372] because I forgot that I'd …
11:52 Ticket #130 (Save is relative to the current directory) created by diane: Mussa doesn't save the path it was loaded from, so when save a …
11:11 Ticket #129 (Subseq doesn't support trees correctly) closed by diane: fixed: Implemented [367]

17:47 Ticket #129 (Subseq doesn't support trees correctly) created by diane: Currently subseq's start/count is always relative to the seq_string, …
14:12 Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) closed by diane: fixed: fixed in [363]
13:12 Ticket #128 (the editable sequence name only shows the end of long names.) closed by diane: fixed: fixed [362] ( I think I spent more time on bug tracking than bug …
13:06 Ticket #128 (the editable sequence name only shows the end of long names.) created by diane: Not terribly important but a long name like "tetraodon" only shows the …
13:05 Ticket #127 (The sidebar layout isn't right after loading a second analysis into ...) created by diane: The layout doesn't put the first description block at the very top …

18:38 Ticket #126 (Figure out how to get the spirit parsers to report parse errors) created by diane: The annotation parser and the motif parser are now both using the …
18:36 Ticket #116 (Perhaps the motif file should have a name field.) closed by diane: fixed: implmented in [361] with the caveat that my spirit parsers don't throw …
15:52 Ticket #73 (Performance problems doing analysis) closed by diane: invalid: This ticket was mostly gathering information about what influences …
15:36 Ticket #125 (autodetect if python needs -lutil) created by diane: On Fedora core the version of python requires being linked with …
15:35 Ticket #124 (report patch version) created by diane: Brandon suggested that it'd be useful for mussa to have some version …
15:33 Ticket #123 (Allow hiding sidebars) created by diane: Tristan complained briefly about the sidebars taking up too much …

18:21 Ticket #101 (On windows, the file browse button doesn't remember the previous path) closed by diane: fixed: Actually this applied to the os x (and probably linux) versions as …
17:31 Ticket #122 (Motif editor needs to support more than 10 motifs) created by diane: I really should be using one of the Qt MVC classes to let the number …
17:13 Ticket #107 (Motifs don't show up on the Mussa Aligned Sequence window anymore.) closed by diane: worksforme: I'm going to pretend this is working at the moment. If someone …
17:11 Ticket #27 (Collect example sequences) closed by diane: fixed: i've got lots of example sequence now... I don't think this is …
17:10 Ticket #114 (Location analyses are saved to is ill-defined on OS X.) closed by diane: fixed: [358] sets the default save as directory to the users home directory, …
16:57 Ticket #119 (Add dependencies to MussaglBuild page) closed by diane: fixed: I think I've added the current set of dependencies.

22:13 Ticket #121 (the load_mupa function choaks when given something other than a file) closed by diane: fixed: Fixed in [352]
17:01 Ticket #121 (the load_mupa function choaks when given something other than a file) created by diane: The load_mussa code hangs when you run mussa --run <directoy name>.

17:51 Ticket #118 (Tracks need an edit properites option.) closed by diane: fixed: The important bit, setting the sequence name was implemented in [336].
14:57 Ticket #120 (Windows doesn't have python installed by default) created by diane: If we're to use python for some glue logic, there's a problem of where …
14:49 Ticket #86 (Progresss bar) closed by diane: fixed: This was done a while ago and left open because the cancel button …

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