Timeline
03/30/2006:
- 15:50 Ticket #80 (Difference between analyses) created by
- It would be useful if you could load an analysis and then load a …
- 14:59 Ticket #68 (The web site should have the Caltech and possibly BMNC logo) closed by
- fixed: Changed to Caltech Logo.
- 11:48 Ticket #79 (It'd be nice if you could annotate by providing fasta files) created by
- Family relations does it... why cant mussa.
03/29/2006:
- 22:59 Ticket #78 (Reverse compliment alignment lines dont seem to match up) created by
- As far as I can tell the lines connecting reverse compliments on the …
- 15:14 Ticket #77 (Font needs to be better...) created by
- Its hard to read…
- 14:57 Ticket #76 (Qt 4.1.1 crashes on barbara's computer) created by
- when going to the alignment view, when built on ali's computer it …
- 14:56 Ticket #75 (The scrollbar navigation when zoomed in jumps too far) created by
- When you navigate by dragging the thumb around on the sequence view …
- 14:26 Ticket #74 (On OSX when maxmizing the sidebar stays on the GL canvas) created by
- 13:24 MussaglBuild edited by
- Comment about versions of Qt4.1 (diff)
- 13:23 MussaglBuild edited by
- (diff)
- 00:26 Ticket #69 (motifs may not be rendering corectly) closed by
- fixed: [155] makes this bearable.
- 00:25 Ticket #71 (AnnotationColors don't always color motifs correctly) reopened by
03/28/2006:
- 23:18 Ticket #71 (AnnotationColors don't always color motifs correctly) closed by
- duplicate: ticket:69 is very closely related.
- 22:55 Ticket #63 (with two sequences the align sequence view doesn't show any connections) closed by
- fixed: Fixed by [154]
- 21:46 Ticket #66 (The annotation for myogenin needs to be checked.) closed by
- fixed: I grabbed annotation for human and mouse from ucsc by clicking on the …
- 21:41 Ticket #60 (sequence alignment view needs zoom) closed by
- fixed
- 18:03 WikiStart edited by
- (diff)
03/27/2006:
- 22:36 Ticket #34 (Unused variable 'max_range' in 'void ...) closed by
- fixed: Fixed in [110] (Someone needs to check my OCD, why did I go hunt that …
- 22:14 Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) closed by
- fixed: ticket:46 was a duplicate
- 22:14 Ticket #46 (link in icons) closed by
- fixed: ticket:50 is duplicate idea specifying an implementation for this. …
- 21:59 Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) closed by
- fixed: Dupe of ticket:55 this is effectively the same ticket as ticket:52, …
- 17:46 Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) closed by
- fixed
- 17:46 Ticket #31 (Threshold Widget should use spinboxes) closed by
- fixed
- 13:05 Ticket #73 (Performance problems doing analysis) created by
- Steven noticed that doing an analysis seemed far slower than with …
- 13:03 Ticket #72 (Myogenin human mouse rat cow chicken files are odd) created by
- In no case was I able to see the feature I had highlighted shown in …
- 13:01 Ticket #71 (AnnotationColors don't always color motifs correctly) created by
- I would show that on the sequence alignment view, some highlighted …
- 12:56 Ticket #70 (Need to be able to save screenshots in View Alignment Page) created by
- 1. when in view alignment screen, and you go to services to grab the …
03/24/2006:
- 18:27 Ticket #69 (motifs may not be rendering corectly) created by
- Especially when moving around the sequence the motifs flash in and …
- 18:17 Ticket #68 (The web site should have the Caltech and possibly BMNC logo) created by
- We should look more professional, and use boring logos
- 18:14 Ticket #67 (You should be able to open multiple analyses) created by
- There should be a way to create multiple MussaAnalysis windows.
- 18:12 Ticket #57 (Define analysis is annoying) closed by
- fixed
- 18:10 Ticket #53 (Copy an example into the os x dmg) closed by
- fixed
- 18:09 Ticket #66 (The annotation for myogenin needs to be checked.) created by
- Also the color could be brighter.
- 18:07 Ticket #65 (It'd be neat if you could select a region and go to ucsc) created by
- This is also useful for fixing annotation problems
- 17:53 Ticket #64 (Occasionally ConservedPath crashes) created by
- don't have good examples to trigger it but I've seen it happen twice
- 17:41 Ticket #63 (with two sequences the align sequence view doesn't show any connections) created by
- I wonder if the alignment view needs at least 3 sequences to render?
- 17:32 Ticket #62 (Aligning sequence that has a reverse compliment doesn't fully align ...) created by
- I suspect the because the reverse compliment is based from the right …
- 17:30 Ticket #61 (For mac users it'd be useful to make double clicking on a data file ...) created by
- Of course somehow we'd need to make an analysis actually be …
- 17:29 Ticket #60 (sequence alignment view needs zoom) created by
- It'd be useful to zoom out a bit from the sequence aligned view to …
- 17:27 Ticket #59 (the washed out sequence should actually be partially transparent.) created by
- It's possible for the selected sequence to be completely hidden, so …
- 16:59 Ticket #58 (why does mussa take so long to recompute a large nway?) created by
- you can load an nway and it'll show up correctly? but if you set back …
03/23/2006:
- 11:55 WikiStart edited by
- (diff)
- 11:53 WikiStart edited by
- (diff)
- 11:52 WikiStart edited by
- (diff)
- 11:03 Ticket #57 (Define analysis is annoying) created by
- When something goes wrong with the define analysis, it catches the …
- 11:02 Ticket #56 (Define analysis should include scroll area when SequenceWidget count >= 3) created by
- Define analysis should include scroll area when SequenceWidget count …
- 10:54 Ticket #55 (Somehow when reloading an analysis it needs to save threshold / window size) created by
- I need some way of knowing when what the threshold and window sizes …
- 10:24 Ticket #54 (Allow compressing repeat regions) created by
- For MEME Ali compressed reprat regions and replaced them with a small …
03/22/2006:
- 18:13 Ticket #53 (Copy an example into the os x dmg) created by
- It'd be useful to include one of the sequence examples when shipping …
- 16:52 Ticket #39 (sidebar rendering problems) closed by
- fixed: [138] should fix this.
- 16:13 Ticket #41 (Selection box jumps slightly to the right of the rubber band) closed by
- fixed: Fixed by [137] and this was caused by the same problem as ticket:43
- 16:11 Ticket #43 (After scrolling a sequence browser window, selection boxes break) closed by
- fixed
- 15:28 Ticket #52 (Saved analysis needs to keep widow size and threshold for threshold widget) created by
- The Mussa class when reloaded from an analysis needs to keep track of …
- 14:22 Ticket #51 (Copying sequence might be useful) created by
- It'd be nice to be able to copy sequence from a sequence track.
- 14:19 Ticket #47 (OS X OpenGL rendering problems) closed by
- fixed: Increasing the line thicknesses in [134] actually worked
- 13:51 Ticket #50 (Switch to using Qt4.1 resources (automatically compiles resources into ...) created by
- Switch to using Qt4.1 resources (automatically compiles resources into …
- 01:50 Ticket #49 (QAssistant Mussa Docs) created by
- A tutorial and/or user manual should be made and included within …
- 01:47 Ticket #48 (Automate win32 installer build) created by
- Wouldn't it be nice if a new build of the win32 installer could be me …
03/21/2006:
- 22:11 WikiStart edited by
- Got Win32 Installer? (diff)
- 21:12 Milestone Bionic Mussa completed
- Duplicate the core functionality of Tristan's FLTK mussa.
- 20:55 Ticket #5 (Configure a mussa analysis from the Gui) closed by
- fixed: Implementation finished in [135] however it revealed a bug on os x …
- 16:46 Ticket #47 (OS X OpenGL rendering problems) created by
- The line widths in the opengl canvas on os x are badly pixelated on …
- 16:44 Ticket #45 (recreate os x bless script) closed by
- fixed: Added in [131]
- 15:03 MussaglBuild edited by
- (diff)
- 12:22 Ticket #46 (link in icons) created by
- OS X can't find the menu icons. It would be best if they were linked …
- 01:28 Ticket #45 (recreate os x bless script) created by
- Need to recreate the qt-mac bless script so I can actually …
- 01:23 darcs edited by
- (diff)
- 00:49 Ticket #14 (Motifs need to be creatable and editable from within the GUI) closed by
- fixed
03/20/2006:
- 17:35 Ticket #44 (Computation of reverse compliment colors is buggy) created by
- For both types of links (mussa windows and base pair alignments) the …
- 17:23 Ticket #37 (Skateboard Shoes) closed by
- fixed: Computations involving ceil hurt my head... I had ceil(left) - seq_x …
- 16:08 Ticket #42 (when resizing you should see more basepairs, not make them bigger.) closed by
- fixed
- 16:07 Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) closed by
- fixed
- 16:02 Ticket #37 (Skateboard Shoes) reopened by
- 15:19 Ticket #37 (Skateboard Shoes) closed by
- fixed: it magically went away.
- 14:13 Ticket #43 (After scrolling a sequence browser window, selection boxes break) created by
- The selection box doesn't work correctly when you've scrolled the …
- 13:55 Ticket #42 (when resizing you should see more basepairs, not make them bigger.) created by
- When resizing the window instead of "zooming" you should see more base …
- 13:48 Ticket #41 (Selection box jumps slightly to the right of the rubber band) created by
- 11:59 Ticket #40 (MussaAlignedWindow, left sequence position doesn't get initial value set) created by
- The left sequence position indicator shows zero, when it should show …
- 00:55 Ticket #39 (sidebar rendering problems) created by
- When there were more than 3 sequences the SequenceBrowserWidget's …
- 00:50 Ticket #4 (Aligned sequence view) closed by
- fixed: [119] seems to at least basically work. I think the reverse …
03/19/2006:
- 16:13 Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) closed by
- fixed
- 16:13 Ticket #38 (Loading a new analysis while an alignment window was open causes segfault) created by
- 01:53 Ticket #37 (Skateboard Shoes) created by
- Somewhere there's an off by one error that only affects the leftbase …
- 01:04 Ticket #36 (Make zoom widget make sense) closed by
- fixed
03/18/2006:
- 01:02 Ticket #36 (Make zoom widget make sense) created by
- The current calculation for the zoom widget is rather odd. It'd be …
03/17/2006:
- 17:11 Ticket #35 (Zoom Icon) closed by
- fixed: See changeset:111
- 16:49 Ticket #35 (Zoom Icon) created by
- Zoom icon for zoom spin box.
- 16:38 Ticket #34 (Unused variable 'max_range' in 'void ...) created by
- qui/seqbrowser/ScrollableSequenceBrowser.cpp: In member function ‘void …
- 16:34 Ticket #32 (The trac pages should become the main mussa website) closed by
- fixed: That should be good enough for now... closing ticket.
- 16:32 WikiStart edited by
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- 16:31 WikiStart edited by
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- 16:30 WikiStart edited by
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- 16:28 WikiStart edited by
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- 16:26 WikiStart edited by
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- 16:26 WikiStart edited by
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- 16:26 WikiStart edited by
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- 16:25 WikiStart edited by
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- 16:11 MussaFltk edited by
- (diff)
- 16:06 WikiStart edited by
- links to tickets. (diff)
- 16:03 WikiStart edited by
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- 16:01 WikiStart edited by
- (diff)
- 15:56 WikiStart edited by
- (diff)
- 15:49 WikiStart edited by
- Adding documentation links. (diff)
- 15:46 MussaglBuild edited by
- (diff)
- 15:45 MussaglBuild created by
- Basic build information (needs work)
- 15:31 darcs edited by
- (diff)
- 15:29 darcs edited by
- directions for checking out a copy of mussagl from darcs repository. (diff)
- 15:11 darcs edited by
- creating darcs instructions (in progress) (diff)
- 15:07 darcs edited by
- (diff)
- 15:07 darcs created by
- 15:02 WikiStart edited by
- (diff)
- 15:00 WikiStart edited by
- Adding download information (slowly) (diff)
- 14:54 WikiStart edited by
- (diff)
- 14:52 WikiStart edited by
- (diff)
- 14:48 WikiStart edited by
- (diff)
- 14:43 MussaFltk edited by
- Mussa C++/FLTK (diff)
- 14:39 MussaFltk created by
- 14:36 WikiStart edited by
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- 14:35 WikiStart edited by
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- 14:34 WikiStart edited by
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- 14:33 WikiStart edited by
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- 14:29 MussaProtoype edited by
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- 14:28 MussaProtoype edited by
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- 14:26 MussaPrototypeCommandline edited by
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- 14:26 MussaPrototypeCommandline created by
- 14:24 MussaProtoype created by
- 14:21 WikiStart edited by
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- 14:19 WikiStart edited by
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- 14:19 WikiStart edited by
- Info on mussa versions (diff)
- 13:49 WikiStart edited by
- cartwheel link (diff)
- 13:42 WikiStart edited by
- (diff)
- 13:41 transitivity edited by
- (diff)
- 13:40 transitivity created by
- 13:39 WikiStart edited by
- Porting useful information from old mussa website to trac wiki (easier … (diff)
03/16/2006:
- 23:26 Ticket #24 (Clean up the signals and slots) closed by
- fixed: It could've been more refactored, but the API is fairly …
- 20:58 Ticket #33 (changing threshold can cause the UI to freeze) created by
- For larger datasets, the length of time it takes to recompute the nway …
- 19:10 Ticket #32 (The trac pages should become the main mussa website) created by
- The trac pages should become the main mussa page. Preferably with …
- 18:02 WikiStart edited by
- (diff)
- 18:01 OriginalTracStartPage created by
- Moving the trac start page out of the way.
- 18:01 WikiStart edited by
- (diff)
- 17:20 Ticket #31 (Threshold Widget should use spinboxes) created by
- There are some weaknesses with the slider bar approach for the mussa …
- 15:19 Ticket #30 (Allow "leave one out" nway transitive searches) created by
- It would be really useful if a path could still be drawn even if it …
- 15:18 Ticket #29 (Connect to Core Match) created by
- Integrate tony's core match algorithm. (Hmm... might also want to …
- 11:14 Ticket #28 (Allow user to force a loaded sequence to be reverse complimented.) created by
- When loading a sequence, it'd be nice to be able indicate that it …
- 11:02 Ticket #27 (Collect example sequences) created by
- mck5 myogenin (stevens worm region) myf4/myf5 big region test case …
- 10:57 Ticket #26 (SubAnalysis mode) created by
- Implement some form of subanalysis mode (last original mussa feature).
- 01:03 Ticket #25 (broke motif colors) closed by
- fixed
- 00:46 Ticket #25 (broke motif colors) created by
- 00:39 Ticket #24 (Clean up the signals and slots) created by
- I don't think I've set up the signals & slots for updating the various …
- 00:37 Ticket #3 (View descriptions) closed by
- fixed: It works though the formatting isn't good, and the class hierarchy …
- 00:16 Ticket #23 (The threshold widget was broken too) closed by
- fixed
- 00:16 Ticket #23 (The threshold widget was broken too) created by
- The change to segment based drawing broke the threshold widget, as …
- 00:12 Ticket #22 (default size hint broken) closed by
- fixed
03/15/2006:
- 19:25 Ticket #22 (default size hint broken) created by
- When launching mussagl without any analysis, it doesn't pick a …
- 17:57 Ticket #16 (figure out how to get selections to work with new segment based drawing) closed by
- fixed: Whenever I close a ticket I seem to immediately open a new one, …
- 17:50 Ticket #21 (Implement a better way of handling the GL selection buffer) created by
- The current opengl selection code uses a hard coded buffer size, which …
- 14:08 Ticket #19 (I broke the scrollbar too) closed by
- fixed: Calls to setLayout from within the QGLWidget derived class' …
- 12:02 Ticket #20 (Toggle Motif Button Implementation) created by
- Make motifs go away... we don't like them... well some times we do.
- 11:23 Ticket #19 (I broke the scrollbar too) created by
- The new draw code also broke the scroll bar. And is there a chance to …
- 02:37 Ticket #18 (segments should indicate if they're both forward and reveresed) created by
- a segment should track forward and reverse compliment separately, as …
- 02:09 Ticket #17 (Allow user to specify an offset for base pair location label) created by
- In order to make it easer to map some random fasta file back to the …
- 02:00 Ticket #16 (figure out how to get selections to work with new segment based drawing) created by
- Though the new segment based drawing is faster it does make selection …
- 01:58 Ticket #2 (Connection view) closed by
- fixed
03/14/2006:
- 14:26 Ticket #15 (Unify build system) created by
- It'd be nice if I didn't have to deal with both the qmake-qt4 derived …
- 00:16 Ticket #14 (Motifs need to be creatable and editable from within the GUI) created by
- I hacked in loading motifs from a file, but there really should be …
- 00:11 Ticket #12 (modify motifs attached to an analysis) closed by
- fixed: Splattering done. User interface missing.
- 00:10 Ticket #13 (AnnotationColor mapper needs a user interface) created by
- One might imagine that users would actually like to edit colors by …
- 00:05 Ticket #1 (Annotation color mapper) closed by
- fixed: The colors are tracked, but there's no UI. I'm going to close this …
03/13/2006:
- 18:03 Ticket #12 (modify motifs attached to an analysis) created by
- There are many ways of going about this, ticket:10 for instance. …
- 17:54 Ticket #11 (create unifed sequence type) created by
- There are many different types of things that we attach to a sequence, …
- 00:17 Ticket #10 (Integrate motifs with annotations) created by
- The old code treated motifis and annotations differently. I think …
03/12/2006:
- 11:52 Ticket #9 (Connect to cartwheel) created by
- Can we connect to cartwheel and be both a front end for cartwheel and …
- 11:50 Ticket #8 (Per species thresholds) created by
- One requested feature was that one could set the threshold of …
- 11:49 Ticket #7 (Reuse seqcomps) created by
- When running a batch of analysis mussa doesn't understand that its …
- 11:47 Ticket #6 (Analysis saving is smelly) created by
- Analysis saving uses system calls to make a directory and splatter a …
03/11/2006:
- 23:47 Ticket #5 (Configure a mussa analysis from the Gui) created by
- Need to be able to provide the sequence and parameters needed to run a …
- 23:46 Ticket #4 (Aligned sequence view) created by
- In addition to the view showing the connections between different …
- 23:44 Ticket #3 (View descriptions) created by
- Users should be able to see things describing a sequence track, like …
- 23:43 Ticket #2 (Connection view) created by
- Provide a GL widget like thing that handles the linking of base pair …
- 23:40 Ticket #1 (Annotation color mapper) created by
- We need some way of tracking the colors an annotation (and motifs) …
03/06/2006:
- 16:34 TracReports created by
- 16:34 TracModPython created by
- 16:34 TracNotification created by
- 16:34 RecentChanges created by
- 16:34 TracRoadmap created by
- 16:34 WikiDeletePage created by
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- 16:34 WikiHtml created by
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- 16:34 TracTickets created by
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- 16:34 SandBox created by
- 16:34 TracGuide created by
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