#77
|
Font needs to be better...
|
Qt Gui
|
new
|
|
|
enhancement
|
critical
|
diane
|
10/13/2006
|
#98
|
QtAssistant needs to be put in the right place on os x.
|
Qt Gui
|
new
|
|
|
enhancement
|
critical
|
diane
|
10/04/2006
|
#100
|
There should be some way to display the annotation name with the annotation track
|
Qt Gui
|
new
|
|
|
enhancement
|
critical
|
diane
|
10/04/2006
|
#108
|
Cancel on the progress bar should do something
|
Qt Gui
|
new
|
|
|
enhancement
|
critical
|
diane
|
10/13/2006
|
#6
|
Analysis saving is smelly
|
core
|
new
|
|
|
task
|
major
|
diane
|
10/13/2006
|
#7
|
Reuse seqcomps
|
core
|
new
|
|
|
enhancement
|
major
|
diane
|
10/20/2006
|
#9
|
Connect to cartwheel
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/13/2006
|
#13
|
AnnotationColor mapper needs a user interface
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/20/2006
|
#17
|
Allow user to specify an offset for base pair location label
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
11/22/2006
|
#21
|
Implement a better way of handling the GL selection buffer
|
core
|
new
|
|
|
task
|
major
|
diane
|
10/13/2006
|
#61
|
For mac users it'd be useful to make double clicking on a data file actually load mussagl
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/13/2006
|
#65
|
It'd be neat if you could select a region and go to ucsc
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
08/23/2006
|
#141
|
Vector output
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/02/2006
|
#145
|
Use titus' paircomp and motility
|
core
|
new
|
|
|
enhancement
|
major
|
diane
|
10/04/2006
|
#201
|
Run analyses in worker thread
|
core
|
new
|
|
|
enhancement
|
major
|
diane
|
10/20/2006
|
#202
|
Investigate SIP instead of boost::python
|
Qt Gui
|
new
|
|
|
task
|
major
|
king
|
05/15/2007
|
#204
|
When you resize a mussa window, resize the drawing too.
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/27/2006
|
#209
|
Extend the command line parsing to allow fully specifying an analysis
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/20/2006
|
#224
|
Define a common base class between MussaWindow and MussAlignedWindow
|
Qt Gui
|
new
|
|
|
enhancement
|
major
|
diane
|
10/26/2006
|
#11
|
create unifed sequence type
|
core
|
new
|
|
|
enhancement
|
minor
|
diane
|
10/20/2006
|
#29
|
Connect to Core Match
|
core
|
new
|
|
|
enhancement
|
minor
|
diane
|
10/13/2006
|
#136
|
allow absolute positioning
|
Qt Gui
|
new
|
|
|
enhancement
|
minor
|
diane
|
10/04/2006
|
#253
|
Show conserved window on local alignment display
|
Qt Gui
|
new
|
|
|
enhancement
|
minor
|
diane
|
03/02/2007
|
#89
|
Blast to find mussa regions
|
core
|
new
|
|
|
enhancement
|
trivial
|
diane
|
10/13/2006
|
#10
|
Integrate motifs with annotations
|
core
|
closed
|
duplicate
|
|
defect
|
major
|
diane
|
10/04/2006
|
#105
|
Load Analysis should spawn a new window
|
Qt Gui
|
closed
|
fixed
|
|
defect
|
minor
|
diane
|
09/15/2006
|
#33
|
changing threshold can cause the UI to freeze
|
Qt Gui
|
closed
|
fixed
|
|
defect
|
major
|
diane
|
06/28/2006
|
#84
|
The analysis title should report what file you loaded
|
Qt Gui
|
closed
|
fixed
|
|
|
trivial
|
diane
|
06/25/2006
|
#67
|
You should be able to open multiple analyses
|
Qt Gui
|
closed
|
duplicate
|
|
|
major
|
diane
|
06/25/2006
|
#177
|
Confirm description of blue conservation tracks is correct.
|
other
|
closed
|
fixed
|
1.0
|
task
|
minor
|
diane
|
02/14/2007
|
#174
|
Confirm file formats are documented and correct.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
diane
|
02/14/2007
|
#213
|
Document how to deselect tracks/paths
|
Qt Gui
|
closed
|
fixed
|
1.0
|
task
|
minor
|
king
|
10/27/2006
|
#170
|
After implementing ticket:164, update 'Load Mupa' section to link to SMN1 example .mupa.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#225
|
Document mussagl command line option
|
Qt Gui
|
closed
|
fixed
|
1.0
|
task
|
minor
|
king
|
10/27/2006
|
#162
|
Mussa manual: Update major new features section
|
other
|
closed
|
fixed
|
1.0
|
task
|
minor
|
king
|
10/27/2006
|
#168
|
Mussa manual: Update Mac OS X install instructions
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#214
|
Document why sub-analysis exists
|
other
|
closed
|
fixed
|
1.0
|
enhancement
|
minor
|
king
|
10/27/2006
|
#227
|
Document Python useage in Mussagl
|
Qt Gui
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#167
|
Add an "Understanding Mussa" section to manual.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#164
|
Include a section on creating a .mupa file using the smn1 data.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#178
|
Update all screenshots to latest version of Mussa.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/27/2006
|
#196
|
Motif editor: document how to delete a motif
|
other
|
closed
|
fixed
|
1.0
|
enhancement
|
major
|
king
|
10/18/2006
|
#179
|
Add a section on "File > New Mussa Window" feature.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/18/2006
|
#189
|
Document "save on close" section after close of ticket:187
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/18/2006
|
#190
|
Update 'save motifs' section after close of ticket #188.
|
other
|
closed
|
fixed
|
1.0
|
task
|
minor
|
king
|
10/18/2006
|
#191
|
Update "Motif Dialog" section
|
other
|
closed
|
fixed
|
1.0
|
enhancement
|
major
|
king
|
10/17/2006
|
#175
|
Document new 'save motifs' feature.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/17/2006
|
#176
|
Document 'Save Analysis' and 'Save Analysis As' features.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/17/2006
|
#185
|
Update "Load an analysis" section (text/screenshots)
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/17/2006
|
#169
|
Update "New Analysis" section as the Dialog box has changed.
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/17/2006
|
#171
|
Remove the "Motif Toggle" button from manual.
|
other
|
closed
|
fixed
|
1.0
|
defect
|
major
|
king
|
10/16/2006
|
#173
|
Update "Sequence Information Bar" section, as it has changed in latest version.
|
other
|
closed
|
fixed
|
1.0
|
enhancement
|
minor
|
king
|
10/16/2006
|
#172
|
Update "Dynamic Threshold" section as the widget has changed.
|
other
|
closed
|
fixed
|
1.0
|
enhancement
|
major
|
king
|
10/16/2006
|
#161
|
Add link to smn1 example data (since the UCSC tutorial is based on it)
|
other
|
closed
|
fixed
|
1.0
|
task
|
major
|
king
|
10/16/2006
|
#152
|
Update mussa_manual.adp to latest tutorial version
|
other
|
closed
|
fixed
|
|
task
|
minor
|
king
|
11/01/2006
|
#137
|
Document why Base pair match lines on the sequence view don't always connect all the sequences
|
other
|
closed
|
fixed
|
|
task
|
trivial
|
diane
|
10/27/2006
|
#181
|
Update 'Load a mussa parameter file' section
|
other
|
closed
|
fixed
|
|
task
|
major
|
king
|
10/17/2006
|
#166
|
Update Mussa summary screenshot to latest version
|
other
|
closed
|
fixed
|
|
task
|
major
|
king
|
10/16/2006
|
#157
|
Mussa manual: document 'save to image' feature
|
other
|
closed
|
fixed
|
|
task
|
major
|
king
|
10/16/2006
|
#156
|
Mussa manual - meta ticket
|
other
|
closed
|
invalid
|
|
task
|
major
|
king
|
10/13/2006
|
#153
|
Allow users to specify the file load file mask
|
Qt Gui
|
closed
|
fixed
|
|
task
|
trivial
|
king
|
10/13/2006
|