#159 |
Create track macro to display changelog with build numbers
|
new
|
king
|
task
|
minor
|
from __future__ import docs
|
#165 |
Include a section on creating a motif list file using the smn1 data.
|
new
|
king
|
task
|
minor
|
from __future__ import docs
|
#198 |
Document the multi add to sub-analysis feature.
|
new
|
king
|
task
|
major
|
document_1.1
|
#202 |
Investigate SIP instead of boost::python
|
new
|
king
|
task
|
major
|
Standing on our heads
|
#221 |
Discover/document effect of ordering species on analysis run times.
|
new
|
king
|
task
|
major
|
document_1.1
|
#231 |
Document copy and paste into motif editor now functional.
|
new
|
king
|
task
|
minor
|
document_1.1
|
#232 |
Document the report bp copied number.
|
new
|
king
|
task
|
major
|
document_1.1
|
#234 |
Document * in title when there are unsaved changes
|
new
|
king
|
task
|
major
|
document_1.1
|
#258 |
document new escape to clear selection
|
new
|
king
|
task
|
major
|
document_1.1
|
#264 |
Document sequence properties
|
new
|
king
|
task
|
major
|
document_1.1
|
#6 |
Analysis saving is smelly
|
new
|
diane
|
task
|
major
|
Standing on our heads
|
#7 |
Reuse seqcomps
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#8 |
Per species thresholds
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#9 |
Connect to cartwheel
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#11 |
create unifed sequence type
|
new
|
diane
|
enhancement
|
minor
|
Standing on our heads
|
#13 |
AnnotationColor mapper needs a user interface
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#17 |
Allow user to specify an offset for base pair location label
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#18 |
segments should indicate if they're both forward and reveresed
|
new
|
diane
|
enhancement
|
minor
|
from __future__ import magic
|
#21 |
Implement a better way of handling the GL selection buffer
|
new
|
diane
|
task
|
major
|
Standing on our heads
|
#28 |
Allow user to force a loaded sequence to be reverse complimented.
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#29 |
Connect to Core Match
|
new
|
diane
|
enhancement
|
minor
|
Standing on our heads
|
#30 |
Allow "leave one out" nway transitive searches
|
new
|
diane
|
enhancement
|
blocker
|
release_1.2
|
#48 |
Automate win32 installer build
|
new
|
diane
|
enhancement
|
minor
|
|
#54 |
Allow compressing repeat regions
|
new
|
diane
|
enhancement
|
minor
|
from __future__ import magic
|
#61 |
For mac users it'd be useful to make double clicking on a data file actually load mussagl
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#65 |
It'd be neat if you could select a region and go to ucsc
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#77 |
Font needs to be better...
|
new
|
diane
|
enhancement
|
critical
|
Standing on our heads
|
#80 |
Difference between analyses
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#81 |
Storing and searching metadata
|
new
|
diane
|
enhancement
|
blocker
|
from __future__ import magic
|
#82 |
Unit test python API
|
new
|
diane
|
enhancement
|
critical
|
unit tests
|
#87 |
Autodetect threshold
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#88 |
Find titus' paper on FR versus the bacterial genomes
|
assigned
|
diane
|
task
|
major
|
|
#89 |
Blast to find mussa regions
|
new
|
diane
|
enhancement
|
trivial
|
Standing on our heads
|
#98 |
QtAssistant needs to be put in the right place on os x.
|
new
|
diane
|
enhancement
|
critical
|
Standing on our heads
|
#100 |
There should be some way to display the annotation name with the annotation track
|
new
|
diane
|
enhancement
|
critical
|
Standing on our heads
|
#106 |
Figure out how to test copySelectedTracks
|
new
|
diane
|
enhancement
|
major
|
unit tests
|
#108 |
Cancel on the progress bar should do something
|
new
|
diane
|
enhancement
|
critical
|
Standing on our heads
|
#112 |
Sequence logo
|
new
|
diane
|
enhancement
|
minor
|
from __future__ import magic
|
#123 |
Allow hiding sidebars
|
new
|
diane
|
enhancement
|
minor
|
release_1.2
|
#124 |
report patch version
|
new
|
diane
|
enhancement
|
minor
|
release_1.2
|
#136 |
allow absolute positioning
|
new
|
diane
|
enhancement
|
minor
|
Standing on our heads
|
#141 |
Vector output
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#145 |
Use titus' paircomp and motility
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#155 |
Include a simple repeat filter
|
new
|
diane
|
enhancement
|
minor
|
from __future__ import magic
|
#193 |
Changing a species name doesn't set dirty flag.
|
new
|
diane
|
enhancement
|
trivial
|
release_1.2
|
#201 |
Run analyses in worker thread
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#203 |
Unit test the code that generates all the mussa filename
|
new
|
diane
|
enhancement
|
major
|
unit tests
|
#204 |
When you resize a mussa window, resize the drawing too.
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#205 |
Add button for autofitting sequence to window
|
new
|
diane
|
enhancement
|
major
|
release_1.2
|
#209 |
Extend the command line parsing to allow fully specifying an analysis
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#218 |
Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog
|
new
|
diane
|
enhancement
|
major
|
release_1.2
|
#219 |
Reordering sequences in an analysis would be really nice
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#220 |
mussa command line seems to be broken...
|
new
|
diane
|
defect
|
critical
|
|
#222 |
Allow hyperlink annotations for CDS to PyMol rendering of protein structure
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#224 |
Define a common base class between MussaWindow and MussAlignedWindow
|
new
|
diane
|
enhancement
|
major
|
Standing on our heads
|
#228 |
Allow more vertical collapse of description widgets
|
new
|
diane
|
enhancement
|
major
|
release_1.2
|
#230 |
shipit script should ship source distribution too.
|
new
|
diane
|
enhancement
|
minor
|
release_1.2
|
#238 |
Set left offset graphically
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#241 |
One of the annotations needed is to show where the start of the gene is
|
new
|
diane
|
enhancement
|
major
|
release_1.2
|
#242 |
make really sure people understand how repeatmasking prevents motifs from being shown.
|
new
|
diane
|
defect
|
major
|
document_1.1
|
#245 |
Implement back_inserter for sequence type
|
new
|
diane
|
enhancement
|
major
|
from __future__ import magic
|
#248 |
Test latest build on all platforms
|
new
|
diane
|
task
|
major
|
release_1.1
|
#249 |
darcs tag mussa_1.1.0
|
new
|
diane
|
defect
|
critical
|
release_1.1
|
#253 |
Show conserved window on local alignment display
|
new
|
diane
|
enhancement
|
minor
|
Standing on our heads
|
#262 |
ThresholdWidget.reset() SIGNAL/SLOTS issue.
|
new
|
diane
|
defect
|
minor
|
release_1.2
|
#263 |
Compile warnings must die!
|
new
|
diane
|
defect
|
critical
|
release_1.1
|
#266 |
Sub-analysis drawing bug (see attached screenshots)
|
new
|
diane
|
defect
|
major
|
release_1.1
|
#267 |
Sequence View soft threshold control non-responsive
|
new
|
diane
|
defect
|
major
|
release_1.1
|
#268 |
files that lack a new line would make the mupa parser choke
|
new
|
diane
|
defect
|
major
|
|