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Ticket Summary Status Owner Type Priority Milestone
#6 Analysis saving is smelly new diane task major Standing on our heads
#7 Reuse seqcomps new diane enhancement major Standing on our heads
#8 Per species thresholds new diane enhancement major from __future__ import magic
#9 Connect to cartwheel new diane enhancement major Standing on our heads
#11 create unifed sequence type new diane enhancement minor Standing on our heads
#13 AnnotationColor mapper needs a user interface new diane enhancement major Standing on our heads
#17 Allow user to specify an offset for base pair location label new diane enhancement major Standing on our heads
#18 segments should indicate if they're both forward and reveresed new diane enhancement minor from __future__ import magic
#21 Implement a better way of handling the GL selection buffer new diane task major Standing on our heads
#28 Allow user to force a loaded sequence to be reverse complimented. new diane enhancement major from __future__ import magic
#29 Connect to Core Match new diane enhancement minor Standing on our heads
#30 Allow "leave one out" nway transitive searches new diane enhancement blocker release_1.2
#48 Automate win32 installer build new diane enhancement minor
#54 Allow compressing repeat regions new diane enhancement minor from __future__ import magic
#61 For mac users it'd be useful to make double clicking on a data file actually load mussagl new diane enhancement major Standing on our heads
#65 It'd be neat if you could select a region and go to ucsc new diane enhancement major Standing on our heads
#77 Font needs to be better... new diane enhancement critical Standing on our heads
#80 Difference between analyses new diane enhancement major from __future__ import magic
#81 Storing and searching metadata new diane enhancement blocker from __future__ import magic
#82 Unit test python API new diane enhancement critical unit tests
#87 Autodetect threshold new diane enhancement major from __future__ import magic
#88 Find titus' paper on FR versus the bacterial genomes assigned diane task major
#89 Blast to find mussa regions new diane enhancement trivial Standing on our heads
#98 QtAssistant needs to be put in the right place on os x. new diane enhancement critical Standing on our heads
#100 There should be some way to display the annotation name with the annotation track new diane enhancement critical Standing on our heads
#106 Figure out how to test copySelectedTracks new diane enhancement major unit tests
#108 Cancel on the progress bar should do something new diane enhancement critical Standing on our heads
#112 Sequence logo new diane enhancement minor from __future__ import magic
#123 Allow hiding sidebars new diane enhancement minor release_1.2
#124 report patch version new diane enhancement minor release_1.2
#136 allow absolute positioning new diane enhancement minor Standing on our heads
#141 Vector output new diane enhancement major Standing on our heads
#145 Use titus' paircomp and motility new diane enhancement major Standing on our heads
#155 Include a simple repeat filter new diane enhancement minor from __future__ import magic
#193 Changing a species name doesn't set dirty flag. new diane enhancement trivial release_1.2
#201 Run analyses in worker thread new diane enhancement major Standing on our heads
#203 Unit test the code that generates all the mussa filename new diane enhancement major unit tests
#204 When you resize a mussa window, resize the drawing too. new diane enhancement major Standing on our heads
#205 Add button for autofitting sequence to window new diane enhancement major release_1.2
#209 Extend the command line parsing to allow fully specifying an analysis new diane enhancement major Standing on our heads
#218 Qt4.2 has a platform independent way to place Ok/Cancel buttons in dialog new diane enhancement major release_1.2
#219 Reordering sequences in an analysis would be really nice new diane enhancement major from __future__ import magic
#220 mussa command line seems to be broken... new diane defect critical
#222 Allow hyperlink annotations for CDS to PyMol rendering of protein structure new diane enhancement major from __future__ import magic
#224 Define a common base class between MussaWindow and MussAlignedWindow new diane enhancement major Standing on our heads
#228 Allow more vertical collapse of description widgets new diane enhancement major release_1.2
#230 shipit script should ship source distribution too. new diane enhancement minor release_1.2
#238 Set left offset graphically new diane enhancement major from __future__ import magic
#241 One of the annotations needed is to show where the start of the gene is new diane enhancement major release_1.2
#242 make really sure people understand how repeatmasking prevents motifs from being shown. new diane defect major document_1.1
#245 Implement back_inserter for sequence type new diane enhancement major from __future__ import magic
#248 Test latest build on all platforms new diane task major release_1.1
#249 darcs tag mussa_1.1.0 new diane defect critical release_1.1
#253 Show conserved window on local alignment display new diane enhancement minor Standing on our heads
#262 ThresholdWidget.reset() SIGNAL/SLOTS issue. new diane defect minor release_1.2
#263 Compile warnings must die! new diane defect critical release_1.1
#266 Sub-analysis drawing bug (see attached screenshots) new diane defect major release_1.1
#267 Sequence View soft threshold control non-responsive new diane defect major release_1.1
#268 files that lack a new line would make the mupa parser choke new diane defect major
#159 Create track macro to display changelog with build numbers new king task minor from __future__ import docs
#165 Include a section on creating a motif list file using the smn1 data. new king task minor from __future__ import docs
#198 Document the multi add to sub-analysis feature. new king task major document_1.1
#202 Investigate SIP instead of boost::python new king task major Standing on our heads
#221 Discover/document effect of ordering species on analysis run times. new king task major document_1.1
#231 Document copy and paste into motif editor now functional. new king task minor document_1.1
#232 Document the report bp copied number. new king task major document_1.1
#234 Document * in title when there are unsaved changes new king task major document_1.1
#258 document new escape to clear selection new king task major document_1.1
#264 Document sequence properties new king task major document_1.1
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